Variant report

Variant	rs10821284
Chromosome Location	chr9:96776124-96776125
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:96773554..96776449-chr9:96974238..96977177,2	MCF-7	breast:
2	chr9:96772918..96776515-chr9:96790364..96794299,3	MCF-7	breast:
3	chr9:96776075..96777015-chr9:96975452..96976127,3	K562	blood:
4	chr9:96773917..96776772-chr9:96957633..96960595,2	K562	blood:
5	chr9:96776018..96777153-chr9:96975464..96976521,5	MCF-7	breast:
6	chr9:96774203..96776787-chr9:96778965..96780484,2	K562	blood:
7	chr9:96775287..96777988-chr9:96778674..96780484,2	K562	blood:
8	chr9:96776042..96777028-chr9:96975491..96976419,9	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000158079	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10117457	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10120093	0.83[AMR][1000 genomes]
rs10122334	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10123954	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10429556	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10429603	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10435922	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10435924	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10739967	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10739969	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10761308	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10761309	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10761313	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10761315	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10821285	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821290	0.82[EUR][1000 genomes]
rs10993037	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10993041	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12351292	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12684427	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1316814	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1320547	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13299545	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1331216	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1331217	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1331218	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1331219	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1343995	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1360429	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1411860	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1418251	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1576640	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1590969	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1592153	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1832857	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1854835	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1933668	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1933669	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1933679	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2026917	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2094927	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2150625	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2153058	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2153070	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2153792	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2211362	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2225458	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2226117	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35883789	0.85[EUR][1000 genomes]
rs3847307	0.85[ASN][1000 genomes]
rs3996241	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4282631	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4406469	0.87[EUR][1000 genomes]
rs4744307	0.84[EUR][1000 genomes]
rs4744308	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4744310	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4744314	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4744316	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6479522	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6479529	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7033481	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7033898	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7045643	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7858069	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7867253	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7867925	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs914295	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs914296	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs914297	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9299414	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs987511	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96773800-96781800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr9:96774000-96776800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr9:96774000-96776800	Weak transcription	HSMMtube	muscle
4	chr9:96774000-96777400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr9:96774200-96779400	Weak transcription	Fetal Stomach	stomach
6	chr9:96774600-96776800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr9:96775200-96780000	Weak transcription	Fetal Lung	lung
8	chr9:96776000-96776400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:96776000-96777000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links