Variant report

Variant	rs10435922
Chromosome Location	chr9:96781419-96781420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96780349..96783883-chr9:96791469..96794571,5	MCF-7	breast:
2	chr9:96772712..96774231-chr9:96780568..96782311,2	MCF-7	breast:
3	chr9:96781040..96783719-chr9:96928515..96930233,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158079	Chromatin interaction
ENSG00000269946	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10117457	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10122334	0.86[ASN][1000 genomes]
rs10123954	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10429556	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10429603	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10435924	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10739967	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10739969	0.86[ASN][1000 genomes]
rs10761308	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10761309	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10761313	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10761315	0.84[ASN][1000 genomes]
rs10821284	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10821285	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821290	0.82[EUR][1000 genomes]
rs10993037	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10993041	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12351292	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12684427	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1316814	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1320547	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13299545	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1331216	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1331217	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1331218	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1331219	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1343995	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1360429	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1411860	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1418251	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1576640	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1590969	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1592153	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1832857	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1854835	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1933668	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1933669	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1933679	0.89[EUR][1000 genomes]
rs2026917	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2094927	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2150625	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2153058	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2153070	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2153792	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2211362	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2225458	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2226117	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35883789	0.84[EUR][1000 genomes]
rs3847307	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3996241	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4282631	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4406469	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4744307	0.83[EUR][1000 genomes]
rs4744308	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4744310	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4744314	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4744316	0.86[ASN][1000 genomes]
rs6479522	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6479529	0.83[ASN][1000 genomes]
rs7033481	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7033898	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7045643	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7858069	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7867253	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7867925	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs914295	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs914296	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs914297	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9299414	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs987511	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96773800-96781800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr9:96779400-96782200	Enhancers	Fetal Stomach	stomach
3	chr9:96780000-96782200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:96780000-96782200	Enhancers	Fetal Lung	lung
5	chr9:96780000-96782400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:96780200-96782200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:96780200-96782200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:96780200-96782200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:96780600-96781600	Enhancers	Fetal Heart	heart
10	chr9:96780800-96788400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr9:96781400-96782000	Enhancers	Osteobl	bone

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