Variant report

Variant	rs4744314
Chromosome Location	chr9:96857198-96857199
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:96848027..96849533-chr9:96856014..96858976,2	K562	blood:
2	chr9:96847188..96849533-chr9:96856467..96859477,3	K562	blood:
3	chr9:96791026..96792800-chr9:96856915..96858416,2	MCF-7	breast:
4	chr9:96856270..96858806-chr9:96864043..96866239,3	MCF-7	breast:
5	chr9:96857107..96860210-chr9:96870662..96873792,3	MCF-7	breast:
6	chr9:96855901..96860991-chr9:96926600..96930762,9	MCF-7	breast:
7	chr9:96856390..96858828-chr9:96926161..96928705,2	K562	blood:
8	chr9:96855903..96857740-chr9:96900937..96903523,2	MCF-7	breast:
9	chr9:96856357..96859423-chr9:96862063..96865399,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000158079	Chromatin interaction
ENSG00000269946	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10117457	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10120093	0.91[AMR][1000 genomes]
rs10122334	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10123954	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10429556	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10429603	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10435922	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10435924	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10739967	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10739969	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10761308	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10761309	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10761313	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10761315	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821284	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10821285	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10821290	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10993037	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10993041	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10993058	0.83[EUR][1000 genomes]
rs12351292	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1316814	0.82[ASN][1000 genomes]
rs1331216	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1331217	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1331218	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1331219	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1343995	0.82[ASN][1000 genomes]
rs1360429	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1411860	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1418251	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1576640	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1590969	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1592153	0.82[ASN][1000 genomes]
rs1832857	0.82[ASN][1000 genomes]
rs1854835	0.83[ASN][1000 genomes]
rs1933668	0.82[ASN][1000 genomes]
rs1933669	0.82[ASN][1000 genomes]
rs2026917	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2094927	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2150625	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2153058	0.81[ASN][1000 genomes]
rs2153070	0.82[ASN][1000 genomes]
rs2153792	0.82[ASN][1000 genomes]
rs2211362	0.82[ASN][1000 genomes]
rs2225458	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2226117	0.82[ASN][1000 genomes]
rs35883789	0.82[EUR][1000 genomes]
rs3763639	0.81[EUR][1000 genomes]
rs3847307	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3996241	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4282631	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4744308	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4744310	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4744316	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6479522	0.82[ASN][1000 genomes]
rs6479527	0.80[EUR][1000 genomes]
rs6479528	0.80[EUR][1000 genomes]
rs6479529	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7033481	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7033898	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7045643	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7858069	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7867925	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs914295	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs914296	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs914297	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9299414	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs987511	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv482457	chr9:96813852-96996170	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	217 gene(s)	inside rSNPs	diseases
3	nsv1043704	chr9:96816552-96873018	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases
5	nsv893591	chr9:96849137-96883271	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96822400-96859800	Weak transcription	Psoas Muscle	Psoas
2	chr9:96824200-96860000	Weak transcription	Aorta	Aorta
3	chr9:96824200-96869600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr9:96828200-96859600	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr9:96828200-96860800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr9:96828200-96862000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr9:96828200-96868200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr9:96829600-96872400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:96832000-96859800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr9:96834400-96859800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr9:96835400-96861800	Weak transcription	Primary B cells from cord blood	blood
12	chr9:96837000-96857400	Weak transcription	HSMM	muscle
13	chr9:96837200-96857400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr9:96837200-96858600	Weak transcription	Dnd41	blood
15	chr9:96837200-96859800	Weak transcription	Fetal Intestine Small	intestine
16	chr9:96837400-96860200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr9:96837600-96859200	Weak transcription	Primary T cells from cord blood	blood
18	chr9:96840200-96863600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:96842600-96858200	Weak transcription	HSMMtube	muscle
20	chr9:96845200-96857600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr9:96845600-96858200	Weak transcription	Right Ventricle	heart
22	chr9:96845600-96858400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr9:96845600-96885400	Weak transcription	Gastric	stomach
24	chr9:96846000-96870600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr9:96846200-96859800	Weak transcription	Ovary	ovary
26	chr9:96847000-96859000	Weak transcription	Lung	lung
27	chr9:96847000-96859800	Weak transcription	Pancreas	Pancrea
28	chr9:96847000-96860200	Weak transcription	Fetal Muscle Trunk	muscle
29	chr9:96847200-96859000	Weak transcription	Fetal Brain Male	brain
30	chr9:96847200-96859000	Weak transcription	Fetal Brain Female	brain
31	chr9:96847600-96859200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr9:96847800-96857400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr9:96847800-96859800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr9:96847800-96859800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr9:96847800-96860200	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr9:96847800-96860200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr9:96847800-96860400	Weak transcription	Spleen	Spleen
38	chr9:96847800-96862600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr9:96848000-96863200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr9:96848600-96858600	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr9:96849000-96857600	Weak transcription	Stomach Smooth Muscle	stomach
42	chr9:96849000-96859600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr9:96849000-96868800	Weak transcription	HepG2	liver
44	chr9:96849200-96858400	Weak transcription	Fetal Intestine Large	intestine
45	chr9:96849200-96859800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr9:96849200-96859800	Weak transcription	NHLF	lung
47	chr9:96849400-96857600	Weak transcription	Brain Angular Gyrus	brain
48	chr9:96849400-96857600	Weak transcription	Brain Cingulate Gyrus	brain
49	chr9:96849400-96858200	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr9:96849400-96859000	Weak transcription	Muscle Satellite Cultured Cells	--

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