Variant report

Variant	rs10821290
Chromosome Location	chr9:96831842-96831843
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96831019..96833354-chr9:96839512..96842200,2	MCF-7	breast:
2	chr9:96823968..96833120-chr9:96926178..96930731,18	MCF-7	breast:
3	chr9:96831050..96832926-chr9:96844749..96847159,2	MCF-7	breast:
4	chr9:96831421..96834835-chr9:96844919..96848368,4	K562	blood:
5	chr9:96831171..96832871-chr9:96960343..96963086,2	MCF-7	breast:
6	chr9:96829876..96832396-chr9:96910876..96912523,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000269946	Chromatin interaction
ENSG00000158079	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10117457	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10122334	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10123954	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10429556	0.83[ASN][1000 genomes]
rs10429603	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10435922	0.82[EUR][1000 genomes]
rs10435924	0.82[EUR][1000 genomes]
rs10739969	0.81[ASN][1000 genomes]
rs10761313	0.82[EUR][1000 genomes]
rs10761315	0.80[ASN][1000 genomes]
rs10821284	0.82[EUR][1000 genomes]
rs10821285	0.84[EUR][1000 genomes]
rs10993037	0.81[EUR][1000 genomes]
rs10993041	0.82[EUR][1000 genomes]
rs1418251	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1576640	0.81[EUR][1000 genomes]
rs2026917	0.83[EUR][1000 genomes]
rs2150625	0.83[EUR][1000 genomes]
rs3847307	0.81[ASN][1000 genomes]
rs4744308	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4744310	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4744314	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4744316	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7033898	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7045643	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7858069	0.81[EUR][1000 genomes]
rs7867925	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs914295	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs914297	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9299414	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv482457	chr9:96813852-96996170	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	217 gene(s)	inside rSNPs	diseases
3	nsv1043704	chr9:96816552-96873018	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96819000-96833400	Weak transcription	HSMM	muscle
2	chr9:96819400-96832800	Weak transcription	HSMMtube	muscle
3	chr9:96820600-96836400	Weak transcription	Pancreas	Pancrea
4	chr9:96822400-96859800	Weak transcription	Psoas Muscle	Psoas
5	chr9:96822600-96832800	Weak transcription	Primary T cells from cord blood	blood
6	chr9:96824000-96845000	Weak transcription	Right Ventricle	heart
7	chr9:96824200-96832800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:96824200-96836600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr9:96824200-96860000	Weak transcription	Aorta	Aorta
10	chr9:96824200-96869600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr9:96824400-96846600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:96824400-96850000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:96824600-96832800	Weak transcription	Fetal Lung	lung
14	chr9:96824600-96836400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr9:96824600-96839400	Weak transcription	Left Ventricle	heart
16	chr9:96824600-96844400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr9:96824600-96845400	Weak transcription	Brain Germinal Matrix	brain
18	chr9:96824800-96832400	Weak transcription	Fetal Muscle Leg	muscle
19	chr9:96824800-96832600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr9:96824800-96836400	Weak transcription	Fetal Intestine Small	intestine
21	chr9:96825000-96832400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr9:96825000-96836400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr9:96825200-96836600	Weak transcription	Lung	lung
24	chr9:96825200-96839800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr9:96825400-96832800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:96825400-96832800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr9:96827800-96836600	Weak transcription	Ovary	ovary
28	chr9:96828200-96833000	Weak transcription	Adipose Nuclei	Adipose
29	chr9:96828200-96836600	Weak transcription	Brain Angular Gyrus	brain
30	chr9:96828200-96836600	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr9:96828200-96847600	Weak transcription	HMEC	breast
32	chr9:96828200-96848400	Weak transcription	Fetal Intestine Large	intestine
33	chr9:96828200-96848600	Weak transcription	Colon Smooth Muscle	Colon
34	chr9:96828200-96859600	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr9:96828200-96860800	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr9:96828200-96862000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr9:96828200-96868200	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr9:96828400-96832400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr9:96828400-96832400	Weak transcription	Stomach Smooth Muscle	stomach
40	chr9:96828400-96832400	Weak transcription	NH-A	brain
41	chr9:96828400-96832800	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr9:96828400-96832800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr9:96828400-96833000	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr9:96828400-96833800	Weak transcription	K562	blood
45	chr9:96828400-96835800	Weak transcription	HUVEC	blood vessel
46	chr9:96828400-96836000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr9:96828400-96836000	Weak transcription	Rectal Smooth Muscle	rectum
48	chr9:96828400-96836400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr9:96828400-96836400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr9:96828400-96839400	Weak transcription	Primary B cells from peripheral blood	blood

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