Variant report

Variant	rs10761315
Chromosome Location	chr9:96875556-96875557
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96860361..96862564-chr9:96873614..96875631,2	K562	blood:
2	chr9:96866436..96868575-chr9:96873729..96876347,3	K562	blood:

Variant related genes	Relation type
ENSG00000158079	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10117457	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10120093	0.84[AMR][1000 genomes]
rs10122334	0.96[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10123954	0.93[ASN][1000 genomes]
rs10429556	0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.94[ASN][1000 genomes]
rs10429603	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10435922	0.84[ASN][1000 genomes]
rs10435924	0.86[ASN][1000 genomes]
rs10739967	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10739969	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10761308	0.80[ASN][1000 genomes]
rs10761309	0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[JPT][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap];0.80[ASN][1000 genomes]
rs10761313	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10821284	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10821285	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10821290	0.80[ASN][1000 genomes]
rs10993037	0.89[ASN][1000 genomes]
rs10993041	0.86[ASN][1000 genomes]
rs10993058	0.96[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs12351292	0.80[ASN][1000 genomes]
rs12684427	0.85[CEU][hapmap];0.95[CHB][hapmap]
rs1316814	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs1320547	0.85[CEU][hapmap];0.95[CHB][hapmap]
rs1331216	0.80[ASN][1000 genomes]
rs1331217	0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1331218	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes]
rs1331219	0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[JPT][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap];0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1343995	0.80[ASN][1000 genomes]
rs1360429	0.80[ASN][1000 genomes]
rs1411860	0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs1418251	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.87[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1576640	0.82[ASN][1000 genomes]
rs1590969	0.80[ASN][1000 genomes]
rs1592153	0.80[ASN][1000 genomes]
rs1832857	0.80[ASN][1000 genomes]
rs1854835	0.81[ASN][1000 genomes]
rs1933668	0.80[ASN][1000 genomes]
rs1933669	0.80[ASN][1000 genomes]
rs2026917	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2094927	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2150625	0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.84[TSI][hapmap];0.88[ASN][1000 genomes]
rs2153070	0.80[ASN][1000 genomes]
rs2153792	0.80[ASN][1000 genomes]
rs2211362	0.80[ASN][1000 genomes]
rs2225458	0.80[ASN][1000 genomes]
rs2226117	0.80[ASN][1000 genomes]
rs3763639	0.90[EUR][1000 genomes]
rs3847307	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3996241	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4282631	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs4744308	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4744310	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4744314	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4744316	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6479522	0.80[ASN][1000 genomes]
rs6479527	0.89[CEU][hapmap]
rs6479528	0.89[CEU][hapmap]
rs6479529	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7033481	0.80[ASN][1000 genomes]
rs7033898	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7045643	0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7858069	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7867925	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs914295	0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.94[ASN][1000 genomes]
rs914296	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs914297	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9299414	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs987511	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv482457	chr9:96813852-96996170	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	217 gene(s)	inside rSNPs	diseases
3	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases
4	nsv893591	chr9:96849137-96883271	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
5	esv2761543	chr9:96857735-96875582	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96845600-96885400	Weak transcription	Gastric	stomach
2	chr9:96849400-96883800	Weak transcription	Brain Germinal Matrix	brain
3	chr9:96857200-96882800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:96859200-96880800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr9:96860200-96876200	Weak transcription	Esophagus	oesophagus
6	chr9:96860800-96886800	Weak transcription	Aorta	Aorta
7	chr9:96861000-96884000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr9:96861400-96884600	Weak transcription	Ovary	ovary
9	chr9:96864200-96877600	Weak transcription	Primary T cells from cord blood	blood
10	chr9:96867600-96889600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr9:96871400-96882800	Weak transcription	Fetal Stomach	stomach
12	chr9:96871400-96885000	Weak transcription	Right Atrium	heart
13	chr9:96871400-96896400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr9:96873200-96877000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr9:96873400-96888600	Weak transcription	HSMM	muscle
16	chr9:96873600-96882600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr9:96873600-96885600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr9:96874200-96896400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr9:96874400-96884200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr9:96874400-96885600	Weak transcription	Brain Hippocampus Middle	brain
21	chr9:96875000-96875800	Enhancers	Adipose Nuclei	Adipose
22	chr9:96875000-96875800	Flanking Active TSS	K562	blood
23	chr9:96875200-96875800	Genic enhancers	Brain Substantia Nigra	brain
24	chr9:96875200-96878200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr9:96875200-96882600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr9:96875400-96875800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr9:96875400-96875800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr9:96875400-96875800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr9:96875400-96883400	Weak transcription	Pancreas	Pancrea
30	chr9:96875400-96887200	Weak transcription	Brain Anterior Caudate	brain

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