Variant report

Variant	rs10122334
Chromosome Location	chr9:96864227-96864228
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96847639..96850039-chr9:96863471..96865147,2	MCF-7	breast:
2	chr9:96856270..96858806-chr9:96864043..96866239,3	MCF-7	breast:
3	chr9:96846694..96848203-chr9:96862701..96864601,2	MCF-7	breast:
4	chr9:96863435..96865449-chr9:96927688..96930142,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158079	Chromatin interaction
ENSG00000269946	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10117457	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10120093	0.86[AMR][1000 genomes]
rs10123954	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10429556	0.83[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.96[ASN][1000 genomes]
rs10429603	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10435922	0.86[ASN][1000 genomes]
rs10435924	0.88[ASN][1000 genomes]
rs10739967	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10739969	0.96[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761308	0.82[ASN][1000 genomes]
rs10761309	0.87[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];0.85[JPT][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10761313	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10761315	0.96[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821284	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10821285	0.87[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821290	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10993037	0.91[ASN][1000 genomes]
rs10993041	0.87[ASN][1000 genomes]
rs10993058	0.91[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs12351292	0.82[ASN][1000 genomes]
rs12684427	0.83[CEU][hapmap];0.85[CHB][hapmap]
rs1316814	0.83[CEU][hapmap];0.90[CHB][hapmap];0.82[CHD][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs1320547	0.83[CEU][hapmap];0.85[CHB][hapmap]
rs1331216	0.82[ASN][1000 genomes]
rs1331217	0.83[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1331218	0.83[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1331219	0.87[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];0.85[JPT][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1343995	0.82[ASN][1000 genomes]
rs1360429	0.82[ASN][1000 genomes]
rs1411860	0.83[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs1418251	0.91[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1576640	0.84[ASN][1000 genomes]
rs1590969	0.82[ASN][1000 genomes]
rs1592153	0.82[ASN][1000 genomes]
rs1832857	0.82[ASN][1000 genomes]
rs1854835	0.82[ASN][1000 genomes]
rs1933668	0.82[ASN][1000 genomes]
rs1933669	0.82[ASN][1000 genomes]
rs2026917	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2094927	0.87[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2150625	0.83[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2153058	0.80[ASN][1000 genomes]
rs2153070	0.82[ASN][1000 genomes]
rs2153792	0.82[ASN][1000 genomes]
rs2211362	0.82[ASN][1000 genomes]
rs2225458	0.82[ASN][1000 genomes]
rs2226117	0.82[ASN][1000 genomes]
rs3763639	0.89[EUR][1000 genomes]
rs3847307	0.96[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3996241	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4282631	0.87[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs4744308	0.83[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4744310	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4744314	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4744316	0.96[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479522	0.82[ASN][1000 genomes]
rs6479527	0.83[CEU][hapmap]
rs6479528	0.83[CEU][hapmap]
rs6479529	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7033481	0.82[ASN][1000 genomes]
rs7033898	0.87[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7045643	0.83[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7858069	0.87[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.82[TSI][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7867925	0.91[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs914295	0.83[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs914296	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs914297	0.83[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9299414	0.82[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs987511	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv482457	chr9:96813852-96996170	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	217 gene(s)	inside rSNPs	diseases
3	nsv1043704	chr9:96816552-96873018	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases
5	nsv893591	chr9:96849137-96883271	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
6	esv2761543	chr9:96857735-96875582	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96824200-96869600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr9:96828200-96868200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr9:96829600-96872400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr9:96845600-96885400	Weak transcription	Gastric	stomach
5	chr9:96846000-96870600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr9:96849000-96868800	Weak transcription	HepG2	liver
7	chr9:96849400-96866800	Weak transcription	Fetal Kidney	kidney
8	chr9:96849400-96869600	Weak transcription	HUVEC	blood vessel
9	chr9:96849400-96869800	Weak transcription	Colon Smooth Muscle	Colon
10	chr9:96849400-96883800	Weak transcription	Brain Germinal Matrix	brain
11	chr9:96849600-96870400	Weak transcription	Fetal Lung	lung
12	chr9:96850600-96870000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr9:96857200-96871000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr9:96857200-96882800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr9:96857400-96868600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:96857800-96865200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr9:96857800-96865400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr9:96858200-96865400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr9:96858400-96865600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr9:96859200-96869600	Weak transcription	HSMMtube	muscle
21	chr9:96859200-96880800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr9:96859600-96864400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr9:96860000-96865400	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr9:96860200-96870200	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr9:96860200-96876200	Weak transcription	Esophagus	oesophagus
26	chr9:96860400-96865200	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr9:96860400-96867400	Weak transcription	Dnd41	blood
28	chr9:96860400-96873400	Weak transcription	NHLF	lung
29	chr9:96860600-96867000	Weak transcription	Psoas Muscle	Psoas
30	chr9:96860600-96870000	Weak transcription	A549	lung
31	chr9:96860600-96870600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr9:96860600-96870800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr9:96860600-96871000	Weak transcription	Brain Angular Gyrus	brain
34	chr9:96860600-96871000	Weak transcription	Right Ventricle	heart
35	chr9:96860600-96872800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr9:96860800-96865200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr9:96860800-96865400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr9:96860800-96866600	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr9:96860800-96866600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr9:96860800-96866600	Weak transcription	Adipose Nuclei	Adipose
41	chr9:96860800-96868800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr9:96860800-96868800	Weak transcription	Fetal Brain Female	brain
43	chr9:96860800-96869600	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr9:96860800-96870600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr9:96860800-96870800	Weak transcription	HSMM	muscle
46	chr9:96860800-96870800	Weak transcription	NH-A	brain
47	chr9:96860800-96870800	Weak transcription	NHDF-Ad	bronchial
48	chr9:96860800-96870800	Weak transcription	NHEK	skin
49	chr9:96860800-96871000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr9:96860800-96871000	Weak transcription	HMEC	breast

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