Variant report

Variant	rs3763639
Chromosome Location	chr9:96874348-96874349
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96860361..96862564-chr9:96873614..96875631,2	K562	blood:
2	chr9:96871682..96874612-chr9:96882240..96883990,2	MCF-7	breast:
3	chr9:96873250..96875198-chr9:96927135..96929620,4	K562	blood:
4	chr9:96873193..96875324-chr9:96934781..96937611,2	K562	blood:
5	chr9:96866436..96868575-chr9:96873729..96876347,3	K562	blood:
6	chr9:96873433..96875351-chr9:96903210..96905278,2	MCF-7	breast:
7	chr9:96872510..96875198-chr9:96927204..96929620,4	K562	blood:

Variant related genes	Relation type
ENSG00000158079	Chromatin interaction
ENSG00000269946	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10122334	0.89[EUR][1000 genomes]
rs10739969	0.89[EUR][1000 genomes]
rs10761315	0.90[EUR][1000 genomes]
rs10993058	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3847307	0.88[EUR][1000 genomes]
rs4744314	0.81[EUR][1000 genomes]
rs4744316	0.89[EUR][1000 genomes]
rs6479527	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6479528	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6479529	0.87[EUR][1000 genomes]
rs7867925	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv482457	chr9:96813852-96996170	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	217 gene(s)	inside rSNPs	diseases
3	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases
4	nsv893591	chr9:96849137-96883271	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
5	esv2761543	chr9:96857735-96875582	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96845600-96885400	Weak transcription	Gastric	stomach
2	chr9:96849400-96883800	Weak transcription	Brain Germinal Matrix	brain
3	chr9:96857200-96882800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:96859200-96880800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr9:96860200-96876200	Weak transcription	Esophagus	oesophagus
6	chr9:96860800-96886800	Weak transcription	Aorta	Aorta
7	chr9:96861000-96884000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr9:96861400-96875200	Weak transcription	Pancreas	Pancrea
9	chr9:96861400-96884600	Weak transcription	Ovary	ovary
10	chr9:96864200-96877600	Weak transcription	Primary T cells from cord blood	blood
11	chr9:96867600-96889600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr9:96869000-96875000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:96871200-96875000	Weak transcription	Adipose Nuclei	Adipose
14	chr9:96871200-96875200	Enhancers	Brain Substantia Nigra	brain
15	chr9:96871400-96882800	Weak transcription	Fetal Stomach	stomach
16	chr9:96871400-96885000	Weak transcription	Right Atrium	heart
17	chr9:96871400-96896400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr9:96871800-96875000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr9:96872800-96874400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr9:96872800-96874400	Enhancers	Brain Hippocampus Middle	brain
21	chr9:96872800-96875200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:96872800-96875200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr9:96873200-96877000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr9:96873400-96888600	Weak transcription	HSMM	muscle
25	chr9:96873600-96875000	Weak transcription	Brain Angular Gyrus	brain
26	chr9:96873600-96875000	Weak transcription	Brain Anterior Caudate	brain
27	chr9:96873600-96875000	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr9:96873600-96882600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr9:96873600-96885600	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr9:96873800-96875000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr9:96874200-96875000	Enhancers	K562	blood
32	chr9:96874200-96896400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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