Variant report

Variant	rs4406469
Chromosome Location	chr9:96811865-96811866
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10117457	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10123954	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10429556	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10429603	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10435922	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10435924	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10739967	0.82[EUR][1000 genomes]
rs10761308	0.81[EUR][1000 genomes]
rs10761309	0.81[EUR][1000 genomes]
rs10761313	0.86[EUR][1000 genomes]
rs10821284	0.87[EUR][1000 genomes]
rs10821285	0.89[EUR][1000 genomes]
rs10993037	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10993041	0.83[EUR][1000 genomes]
rs12351292	0.82[EUR][1000 genomes]
rs1331216	0.82[EUR][1000 genomes]
rs1331217	0.82[EUR][1000 genomes]
rs1331218	0.82[EUR][1000 genomes]
rs1331219	0.83[EUR][1000 genomes]
rs1360429	0.82[EUR][1000 genomes]
rs1411860	0.82[EUR][1000 genomes]
rs1418251	0.81[EUR][1000 genomes]
rs1576640	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1590969	0.82[EUR][1000 genomes]
rs2026917	0.88[EUR][1000 genomes]
rs2094927	0.82[EUR][1000 genomes]
rs2150625	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2225458	0.82[EUR][1000 genomes]
rs3996241	0.82[EUR][1000 genomes]
rs4282631	0.82[EUR][1000 genomes]
rs4744308	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4744310	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7033481	0.81[EUR][1000 genomes]
rs7033898	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7045643	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7858069	0.85[EUR][1000 genomes]
rs914295	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs914296	0.81[EUR][1000 genomes]
rs914297	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9299414	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs987511	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	esv3422828	chr9:96807631-96812729	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96794200-96828000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:96795400-96823800	Weak transcription	Left Ventricle	heart
3	chr9:96798200-96822400	Weak transcription	Fetal Lung	lung
4	chr9:96800000-96818600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:96805600-96812800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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