Variant report
| Variant | rs1329981 |
|---|---|
| Chromosome Location | chr1:74098899-74098900 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No data |
| No data |
| No data |
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| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000223479 | TF binding region |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs10890054 | 0.82[EUR][1000 genomes] |
| rs11210300 | 0.82[EUR][1000 genomes] |
| rs12025606 | 0.81[EUR][1000 genomes] |
| rs12029032 | 0.81[EUR][1000 genomes] |
| rs1411282 | 0.81[EUR][1000 genomes] |
| rs6694107 | 0.81[EUR][1000 genomes] |
| rs7540134 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7542794 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1005356 | chr1:73542786-74124065 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv830226 | chr1:73950139-74125303 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
