Variant report

Variant	rs7542794
Chromosome Location	chr1:74042455-74042456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10159060	0.80[AMR][1000 genomes]
rs10890054	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11210300	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12025606	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12029032	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12033289	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1329981	0.81[EUR][1000 genomes]
rs1360243	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1411282	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1556193	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1604137	0.81[AMR][1000 genomes]
rs1854644	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6666312	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6667503	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6694107	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7540134	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005356	chr1:73542786-74124065	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830226	chr1:73950139-74125303	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:74041400-74045400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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