Variant report

Variant	rs12033289
Chromosome Location	chr1:74028580-74028581
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10789373	0.83[ASN][1000 genomes]
rs10890054	0.90[EUR][1000 genomes]
rs11210274	0.83[ASN][1000 genomes]
rs11210300	0.90[EUR][1000 genomes]
rs12025606	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12026485	0.83[ASN][1000 genomes]
rs12029032	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1360243	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1411282	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1556193	0.83[ASN][1000 genomes]
rs1854644	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2341392	0.83[ASN][1000 genomes]
rs61605983	0.83[ASN][1000 genomes]
rs6666312	0.83[ASN][1000 genomes]
rs6667503	0.83[ASN][1000 genomes]
rs6694107	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7540134	0.87[EUR][1000 genomes]
rs7542794	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005356	chr1:73542786-74124065	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv870536	chr1:73647909-74031554	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv830226	chr1:73950139-74125303	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:74027200-74029000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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