Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10789370	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10789373	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11210219	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11210261	0.86[ASN][1000 genomes]
rs11210263	0.86[ASN][1000 genomes]
rs11581459	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12026485	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12033289	0.83[ASN][1000 genomes]
rs12127629	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12135094	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12754690	0.86[ASN][1000 genomes]
rs1360243	0.82[ASN][1000 genomes]
rs2025080	0.80[EUR][1000 genomes]
rs2341392	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4113049	0.83[ASN][1000 genomes]
rs525701	0.83[ASN][1000 genomes]
rs61605983	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6698993	0.83[ASN][1000 genomes]
rs6701520	0.83[ASN][1000 genomes]
rs7515828	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7546987	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7547059	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005356	chr1:73542786-74124065	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv870536	chr1:73647909-74031554	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv830226	chr1:73950139-74125303	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73982200-73987000	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr1:73982400-73983400	Weak transcription	Brain Germinal Matrix	brain
3	chr1:73983000-73984400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr1:73983000-73987000	Weak transcription	Monocytes-CD14+_RO01746	blood

Quick Search: