Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10493518	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10789370	0.84[AMR][1000 genomes]
rs10789373	0.83[ASN][1000 genomes]
rs11210219	0.85[AMR][1000 genomes]
rs11210235	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11210261	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11210263	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11210274	0.83[ASN][1000 genomes]
rs11581459	0.85[AMR][1000 genomes]
rs12026485	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12127629	0.85[AMR][1000 genomes]
rs12135094	0.85[AMR][1000 genomes]
rs12754690	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1923201	0.83[JPT][hapmap]
rs2341392	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs525701	0.93[ASN][1000 genomes]
rs61605983	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6698993	0.93[ASN][1000 genomes]
rs6701520	0.93[ASN][1000 genomes]
rs7515828	0.85[AMR][1000 genomes]
rs7546305	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7546987	0.85[AMR][1000 genomes]
rs7547059	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005356	chr1:73542786-74124065	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv870536	chr1:73647909-74031554	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv461962	chr1:73742019-73910055	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv546572	chr1:73742019-73910055	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73909600-73910000	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr1:73909600-73910000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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