Variant report

Variant	rs12135094
Chromosome Location	chr1:73848944-73848945
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10493518	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10749819	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10789370	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10789373	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11210209	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11210219	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11210235	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11210274	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11581459	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12127629	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1475061	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1475062	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1475063	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1885246	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1885247	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1923201	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1923206	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1923207	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2025080	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4113049	0.85[AMR][1000 genomes]
rs4593766	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6424545	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6424546	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6424547	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6424548	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6684973	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7515828	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7546305	0.99[ASN][1000 genomes]
rs7546987	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7547059	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9425118	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005356	chr1:73542786-74124065	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv871554	chr1:73647909-73882880	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv870536	chr1:73647909-74031554	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv461962	chr1:73742019-73910055	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv546572	chr1:73742019-73910055	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1012862	chr1:73806210-73898030	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73847400-73849400	Enhancers	Fetal Intestine Small	intestine
2	chr1:73848800-73849400	Active TSS	Duodenum Mucosa	Duodenum

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