Variant report
| Variant | rs7546305 |
|---|---|
| Chromosome Location | chr1:73847802-73847803 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10493518 | 0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10749819 | 0.93[ASN][1000 genomes] |
| rs10789370 | 0.99[ASN][1000 genomes] |
| rs11210209 | 0.89[ASN][1000 genomes] |
| rs11210219 | 0.98[ASN][1000 genomes] |
| rs11210235 | 0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11210261 | 0.88[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11210263 | 0.88[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11581459 | 1.00[ASN][1000 genomes] |
| rs12026485 | 0.83[AMR][1000 genomes] |
| rs12127629 | 0.98[ASN][1000 genomes] |
| rs12135094 | 0.99[ASN][1000 genomes] |
| rs12754690 | 0.88[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs1475061 | 0.89[ASN][1000 genomes] |
| rs1475062 | 0.89[ASN][1000 genomes] |
| rs1475063 | 0.89[ASN][1000 genomes] |
| rs1885246 | 0.91[ASN][1000 genomes] |
| rs1885247 | 0.91[ASN][1000 genomes] |
| rs1923201 | 0.92[CHB][hapmap];1.00[JPT][hapmap] |
| rs1923206 | 0.93[ASN][1000 genomes] |
| rs1923207 | 0.91[ASN][1000 genomes] |
| rs1923240 | 1.00[CEU][hapmap];0.87[YRI][hapmap] |
| rs2025080 | 0.93[ASN][1000 genomes] |
| rs2341392 | 0.83[AMR][1000 genomes] |
| rs4113049 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs4593766 | 0.89[ASN][1000 genomes] |
| rs61605983 | 0.83[AMR][1000 genomes] |
| rs6424545 | 0.89[ASN][1000 genomes] |
| rs6424546 | 0.89[ASN][1000 genomes] |
| rs6424547 | 0.89[ASN][1000 genomes] |
| rs6424548 | 0.89[ASN][1000 genomes] |
| rs6684973 | 0.91[ASN][1000 genomes] |
| rs7515828 | 1.00[ASN][1000 genomes] |
| rs7546987 | 0.98[ASN][1000 genomes] |
| rs7547059 | 0.98[ASN][1000 genomes] |
| rs9425118 | 0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1005356 | chr1:73542786-74124065 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv871554 | chr1:73647909-73882880 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv870536 | chr1:73647909-74031554 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv461962 | chr1:73742019-73910055 | Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv546572 | chr1:73742019-73910055 | Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 6 | nsv1012862 | chr1:73806210-73898030 | Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | lncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:73847400-73849400 | Enhancers | Fetal Intestine Small | intestine |
