Variant report

Variant	rs7540134
Chromosome Location	chr1:74077588-74077589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10159060	0.86[ASN][1000 genomes]
rs10890054	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11210300	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12025606	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12029032	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12033289	0.87[EUR][1000 genomes]
rs1329981	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1360243	0.89[EUR][1000 genomes]
rs1411282	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1556193	0.82[AMR][1000 genomes]
rs1604137	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1854644	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6666312	0.81[AMR][1000 genomes]
rs6667503	0.81[AMR][1000 genomes]
rs6694107	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7517062	0.86[ASN][1000 genomes]
rs7542794	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005356	chr1:73542786-74124065	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830226	chr1:73950139-74125303	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:74076400-74077600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:74077200-74078000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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