Variant report

Variant	rs13301440
Chromosome Location	chr9:86080324-86080325
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2375927	0.80[AMR][1000 genomes]
rs35161622	0.84[AMR][1000 genomes]
rs35928246	0.82[AMR][1000 genomes]
rs4877768	0.83[AMR][1000 genomes]
rs4877770	0.81[AMR][1000 genomes]
rs4877773	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4877774	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4877775	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4877776	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4877777	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7851397	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7855690	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7869397	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7872891	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7873016	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86056000-86085200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr9:86059600-86081000	Weak transcription	Fetal Brain Male	brain
3	chr9:86061200-86081400	Weak transcription	HepG2	liver
4	chr9:86074600-86093200	Weak transcription	Pancreas	Pancrea
5	chr9:86075200-86083600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr9:86075200-86086000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr9:86076400-86082600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr9:86079000-86083800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:86079000-86085200	Weak transcription	Psoas Muscle	Psoas
10	chr9:86079200-86081000	Weak transcription	Right Atrium	heart
11	chr9:86079400-86080800	Weak transcription	Left Ventricle	heart
12	chr9:86079400-86081400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:86079400-86084000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:86079400-86086400	Weak transcription	Right Ventricle	heart
15	chr9:86079600-86081400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr9:86079600-86084400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr9:86079800-86081400	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr9:86080000-86081400	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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