Variant report

Variant	rs2375927
Chromosome Location	chr9:86084179-86084180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13301440	0.80[AMR][1000 genomes]
rs17086319	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35161622	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35928246	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877768	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4877770	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4877773	0.82[AMR][1000 genomes]
rs4877774	0.82[AMR][1000 genomes]
rs4877775	0.82[AMR][1000 genomes]
rs4877777	0.82[AMR][1000 genomes]
rs7039039	0.88[EUR][1000 genomes]
rs7851397	0.82[AMR][1000 genomes]
rs7855690	0.82[AMR][1000 genomes]
rs7869397	0.82[AMR][1000 genomes]
rs7872891	0.82[AMR][1000 genomes]
rs7873016	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86056000-86085200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr9:86074600-86093200	Weak transcription	Pancreas	Pancrea
3	chr9:86075200-86086000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr9:86079000-86085200	Weak transcription	Psoas Muscle	Psoas
5	chr9:86079400-86086400	Weak transcription	Right Ventricle	heart
6	chr9:86079600-86084400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr9:86081400-86084800	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr9:86081400-86085200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr9:86081800-86085000	Weak transcription	HepG2	liver
10	chr9:86081800-86086400	Weak transcription	Right Atrium	heart
11	chr9:86082200-86084800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:86082400-86084200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr9:86082400-86084400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr9:86082600-86084400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr9:86082600-86084600	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr9:86082600-86084800	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr9:86082600-86085400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:86083000-86084400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr9:86083200-86084200	Enhancers	Fetal Intestine Large	intestine
20	chr9:86083600-86084600	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr9:86083800-86085000	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr9:86084000-86085400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:86084000-86085400	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr9:86084000-86085400	Weak transcription	Left Ventricle	heart
25	chr9:86084000-86086200	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr9:86084000-86086600	Enhancers	Fetal Muscle Leg	muscle
27	chr9:86084000-86088000	Weak transcription	Lung	lung

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