Variant report

Variant	rs7869397
Chromosome Location	chr9:86079332-86079333
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12552693	0.84[CHB][hapmap];0.81[CHD][hapmap]
rs13301440	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17086319	0.85[CEU][hapmap];0.80[AMR][1000 genomes]
rs2375927	0.82[AMR][1000 genomes]
rs35161622	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs35928246	0.84[AMR][1000 genomes]
rs4877257	0.90[CHB][hapmap];0.81[CHD][hapmap]
rs4877768	0.93[ASW][hapmap];0.85[CEU][hapmap];0.80[LWK][hapmap];0.82[MKK][hapmap];0.80[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs4877770	0.85[CEU][hapmap];0.83[AMR][1000 genomes]
rs4877773	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877775	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877777	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877785	0.84[CHB][hapmap]
rs7851397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7855690	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7872891	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7873016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86056000-86085200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr9:86059600-86081000	Weak transcription	Fetal Brain Male	brain
3	chr9:86061200-86081400	Weak transcription	HepG2	liver
4	chr9:86074600-86093200	Weak transcription	Pancreas	Pancrea
5	chr9:86075200-86083600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr9:86075200-86086000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr9:86076400-86082600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr9:86078400-86080000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr9:86078600-86079600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:86078800-86079400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:86078800-86079400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:86078800-86079400	Enhancers	Left Ventricle	heart
13	chr9:86079000-86079400	Enhancers	Right Ventricle	heart
14	chr9:86079000-86079600	Enhancers	H9 Cell Line	embryonic stem cell
15	chr9:86079000-86083800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr9:86079000-86085200	Weak transcription	Psoas Muscle	Psoas
17	chr9:86079200-86081000	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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