Variant report

No.	Distal block	Cell Line	Cell type
1	chr9:86117245..86119627-chr9:86150971..86153114,2	MCF-7	breast:
2	chr9:86118797..86120405-chr9:86123841..86126102,2	MCF-7	breast:
3	chr9:86118852..86120364-chr9:86125078..86127486,2	K562	blood:
4	chr9:86118460..86121730-chr9:86121736..86127065,5	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11795151	0.81[EUR][1000 genomes]
rs12552693	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3860932	0.81[CEU][hapmap]
rs3860942	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs4363276	0.81[EUR][1000 genomes]
rs4424349	0.89[CEU][hapmap]
rs4877257	0.95[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];0.88[MEX][hapmap];0.93[ASN][1000 genomes]
rs4877773	0.84[CHB][hapmap];0.81[CHD][hapmap]
rs4877774	0.84[CHB][hapmap]
rs4877776	0.81[CHB][hapmap]
rs4877777	0.84[CHB][hapmap]
rs4877783	0.81[CEU][hapmap]
rs4877786	0.80[EUR][1000 genomes]
rs7042568	0.81[EUR][1000 genomes]
rs7043391	0.81[EUR][1000 genomes]
rs7851397	0.84[CHB][hapmap]
rs7855690	0.84[CHB][hapmap]
rs7862471	0.81[EUR][1000 genomes]
rs7869397	0.84[CHB][hapmap]
rs7872891	0.84[CHB][hapmap];0.81[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1038884	chr9:86089963-86215800	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86107200-86123000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr9:86108000-86120200	Weak transcription	Psoas Muscle	Psoas
3	chr9:86108000-86120200	Weak transcription	Right Ventricle	heart
4	chr9:86114400-86119600	Weak transcription	HepG2	liver
5	chr9:86114800-86145800	Weak transcription	Aorta	Aorta
6	chr9:86115200-86141000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:86115600-86120800	Weak transcription	NHLF	lung
8	chr9:86116200-86123000	Weak transcription	Fetal Brain Female	brain
9	chr9:86116200-86125600	Weak transcription	Hela-S3	cervix
10	chr9:86117000-86123200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr9:86117600-86124200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr9:86118200-86121000	Enhancers	Fetal Muscle Leg	muscle
13	chr9:86118400-86119200	Enhancers	Left Ventricle	heart
14	chr9:86118400-86129000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr9:86118600-86119400	Enhancers	Fetal Muscle Trunk	muscle
16	chr9:86118600-86119400	Enhancers	Ovary	ovary
17	chr9:86118600-86119400	Enhancers	Right Atrium	heart
18	chr9:86118600-86119400	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr9:86118800-86119200	Enhancers	Pancreas	Pancrea
20	chr9:86118800-86119400	Enhancers	Spleen	Spleen
21	chr9:86119000-86119200	Enhancers	Adipose Nuclei	Adipose

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