Variant report

Variant	rs4877257
Chromosome Location	chr9:86117611-86117612
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12552693	0.95[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.88[MEX][hapmap];0.93[ASN][1000 genomes]
rs3860940	0.85[CEU][hapmap]
rs4877773	0.90[CHB][hapmap];0.84[CHD][hapmap]
rs4877774	0.90[CHB][hapmap]
rs4877776	0.88[CHB][hapmap]
rs4877777	0.90[CHB][hapmap];0.81[CHD][hapmap]
rs4877785	0.95[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];0.88[MEX][hapmap];0.93[ASN][1000 genomes]
rs6559728	0.88[CEU][hapmap]
rs7851397	0.90[CHB][hapmap]
rs7855690	0.90[CHB][hapmap]
rs7869397	0.90[CHB][hapmap];0.81[CHD][hapmap]
rs7872891	0.90[CHB][hapmap];0.84[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1038884	chr9:86089963-86215800	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86107200-86123000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr9:86107600-86118600	Weak transcription	Ovary	ovary
3	chr9:86107800-86118400	Weak transcription	Left Ventricle	heart
4	chr9:86107800-86118600	Weak transcription	Right Atrium	heart
5	chr9:86108000-86120200	Weak transcription	Psoas Muscle	Psoas
6	chr9:86108000-86120200	Weak transcription	Right Ventricle	heart
7	chr9:86114400-86119600	Weak transcription	HepG2	liver
8	chr9:86114800-86145800	Weak transcription	Aorta	Aorta
9	chr9:86115200-86141000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:86115600-86120800	Weak transcription	NHLF	lung
11	chr9:86116200-86123000	Weak transcription	Fetal Brain Female	brain
12	chr9:86116200-86125600	Weak transcription	Hela-S3	cervix
13	chr9:86117000-86123200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:86117400-86118800	Weak transcription	Pancreas	Pancrea
15	chr9:86117600-86124200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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