Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:86095916..86097747-chr9:86098970..86101309,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000252256	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11787686	0.89[JPT][hapmap]
rs12552693	0.81[CEU][hapmap]
rs17086317	0.88[JPT][hapmap]
rs35580298	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3860934	0.81[CEU][hapmap];0.86[AFR][1000 genomes]
rs3860942	0.92[CEU][hapmap]
rs4014024	0.88[JPT][hapmap]
rs4424349	0.93[CEU][hapmap]
rs4877780	0.81[ASN][1000 genomes]
rs4877785	0.81[CEU][hapmap]
rs5014092	0.89[JPT][hapmap]
rs5014093	0.88[JPT][hapmap]
rs5014094	0.88[JPT][hapmap]
rs5014095	0.89[JPT][hapmap]
rs5014096	0.89[JPT][hapmap]
rs62560308	0.81[ASN][1000 genomes]
rs7020613	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs7021023	0.82[ASN][1000 genomes]
rs7026481	0.88[JPT][hapmap]
rs7026525	0.89[JPT][hapmap]
rs7037642	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1038884	chr9:86089963-86215800	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86089800-86106600	Weak transcription	Hela-S3	cervix
2	chr9:86098000-86106400	Weak transcription	Psoas Muscle	Psoas

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