Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11787686	0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17086317	0.90[CHB][hapmap];0.96[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.97[ASN][1000 genomes]
rs17086319	0.82[MEX][hapmap]
rs2375931	0.95[ASN][1000 genomes]
rs3860932	0.88[JPT][hapmap]
rs4877768	0.82[MEX][hapmap]
rs4877770	0.85[MEX][hapmap]
rs4877780	0.81[ASN][1000 genomes]
rs5014090	0.97[ASN][1000 genomes]
rs5014091	0.97[ASN][1000 genomes]
rs5014092	0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs5014093	0.90[CHB][hapmap];0.96[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap];0.97[ASN][1000 genomes]
rs5014094	0.90[CHB][hapmap];0.96[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap];0.97[ASN][1000 genomes]
rs5014095	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs5014096	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs62560307	0.94[ASN][1000 genomes]
rs62560308	0.81[ASN][1000 genomes]
rs6559728	0.85[YRI][hapmap]
rs7020613	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7021023	0.80[ASN][1000 genomes]
rs7026481	0.90[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.97[ASN][1000 genomes]
rs7026525	0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4014024	TLE1	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86056000-86085200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr9:86059600-86081000	Weak transcription	Fetal Brain Male	brain
3	chr9:86061200-86081400	Weak transcription	HepG2	liver
4	chr9:86065800-86078800	Weak transcription	Left Ventricle	heart
5	chr9:86072400-86076000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr9:86074600-86079000	Weak transcription	Right Ventricle	heart
7	chr9:86074600-86093200	Weak transcription	Pancreas	Pancrea
8	chr9:86075200-86083600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr9:86075200-86086000	Weak transcription	Rectal Mucosa Donor 31	rectum

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