Variant report
| Variant | rs7021023 |
|---|---|
| Chromosome Location | chr9:86095513-86095514 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11787686 | 0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs17086317 | 0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2375931 | 0.86[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs35580298 | 0.84[ASN][1000 genomes] |
| rs3860932 | 0.82[ASN][1000 genomes] |
| rs4014024 | 0.80[ASN][1000 genomes] |
| rs4877780 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs5014090 | 0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs5014091 | 0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs5014092 | 0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs5014093 | 0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs5014094 | 0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs5014095 | 0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs5014096 | 0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs62560307 | 0.89[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs62560308 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7020613 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7026481 | 0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7026525 | 0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7039039 | 0.93[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv893512 | chr9:86022215-86323309 | Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| 2 | nsv1038884 | chr9:86089963-86215800 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:86089800-86106600 | Weak transcription | Hela-S3 | cervix |
