Variant report

Variant	rs7862471
Chromosome Location	chr9:86125108-86125109
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:86123551..86125411-chr9:86152572..86154858,2	MCF-7	breast:
2	chr9:86118460..86121730-chr9:86121736..86127065,5	MCF-7	breast:
3	chr9:86118852..86120364-chr9:86125078..86127486,2	K562	blood:
4	chr9:86118797..86120405-chr9:86123841..86126102,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000172159	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11789184	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11795151	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12552693	0.81[EUR][1000 genomes]
rs34077008	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3860933	0.84[AMR][1000 genomes]
rs3860934	0.93[ASN][1000 genomes]
rs3860940	0.93[ASN][1000 genomes]
rs3860941	0.98[ASN][1000 genomes]
rs3860942	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4097643	0.95[ASN][1000 genomes]
rs4097644	0.95[ASN][1000 genomes]
rs4111744	0.95[ASN][1000 genomes]
rs4263845	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4363276	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4424349	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877783	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4877785	0.81[EUR][1000 genomes]
rs4877786	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5028328	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6559728	0.93[ASN][1000 genomes]
rs7025284	0.84[AMR][1000 genomes]
rs7037642	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7042568	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7043391	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7043575	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7046729	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7863618	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1038884	chr9:86089963-86215800	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86114800-86145800	Weak transcription	Aorta	Aorta
2	chr9:86115200-86141000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:86116200-86125600	Weak transcription	Hela-S3	cervix
4	chr9:86118400-86129000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr9:86119200-86125200	Weak transcription	Pancreas	Pancrea
6	chr9:86119400-86127800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr9:86121400-86125800	Weak transcription	Fetal Kidney	kidney
8	chr9:86123000-86125200	Enhancers	Fetal Heart	heart
9	chr9:86123200-86127600	Weak transcription	Adipose Nuclei	Adipose
10	chr9:86123400-86125200	Enhancers	Fetal Muscle Leg	muscle
11	chr9:86123400-86125200	Enhancers	Left Ventricle	heart
12	chr9:86123400-86125400	Enhancers	Right Atrium	heart
13	chr9:86123600-86125400	Weak transcription	HUVEC	blood vessel
14	chr9:86123600-86125600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr9:86123600-86126200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr9:86123800-86125200	Enhancers	Fetal Brain Male	brain
17	chr9:86123800-86125400	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr9:86123800-86127600	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr9:86123800-86129200	Weak transcription	HepG2	liver
20	chr9:86124000-86125200	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr9:86124000-86125200	Enhancers	HSMMtube	muscle
22	chr9:86124000-86125200	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr9:86124000-86126600	Enhancers	NHDF-Ad	bronchial
24	chr9:86124200-86125200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr9:86124200-86125200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr9:86124200-86126400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr9:86124400-86125800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:86124600-86125200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr9:86124800-86125200	Weak transcription	Small Intestine	intestine
30	chr9:86124800-86125600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr9:86125000-86125200	Enhancers	Fetal Muscle Trunk	muscle
32	chr9:86125000-86125600	Enhancers	Psoas Muscle	Psoas
33	chr9:86125000-86125800	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr9:86125000-86126400	Weak transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links