Variant report

Variant	rs7043575
Chromosome Location	chr9:86127203-86127204
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:86118852..86120364-chr9:86125078..86127486,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11789184	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11795151	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34077008	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3860933	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3860934	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3860940	0.98[ASN][1000 genomes]
rs3860941	0.93[ASN][1000 genomes]
rs3860942	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4097643	0.91[ASN][1000 genomes]
rs4097644	0.91[ASN][1000 genomes]
rs4111744	0.91[ASN][1000 genomes]
rs4263845	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4363276	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4424349	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4877783	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877786	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5028328	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59177824	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6559728	0.98[ASN][1000 genomes]
rs7025284	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7037642	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7042568	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7043391	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7046729	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7862471	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7863618	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1038884	chr9:86089963-86215800	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86114800-86145800	Weak transcription	Aorta	Aorta
2	chr9:86115200-86141000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:86118400-86129000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr9:86119400-86127800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr9:86123200-86127600	Weak transcription	Adipose Nuclei	Adipose
6	chr9:86123800-86127600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr9:86123800-86129200	Weak transcription	HepG2	liver
8	chr9:86125200-86128000	Weak transcription	Fetal Muscle Leg	muscle
9	chr9:86125200-86128400	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr9:86125400-86127400	Weak transcription	Right Atrium	heart
11	chr9:86125400-86129200	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr9:86125400-86131800	Weak transcription	Small Intestine	intestine
13	chr9:86126000-86128000	Enhancers	Psoas Muscle	Psoas
14	chr9:86126200-86127800	Weak transcription	Fetal Kidney	kidney
15	chr9:86126200-86127800	Enhancers	Left Ventricle	heart
16	chr9:86126800-86128800	Enhancers	Monocytes-CD14+_RO01746	blood

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