Variant report
| Variant | rs3860933 |
|---|---|
| Chromosome Location | chr9:86100937-86100938 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:86095916..86097747-chr9:86098970..86101309,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000252256 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11789184 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs11795151 | 0.83[AMR][1000 genomes] |
| rs34077008 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs35580298 | 0.96[AFR][1000 genomes] |
| rs3860934 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3860942 | 0.84[AMR][1000 genomes] |
| rs4263845 | 0.82[AMR][1000 genomes] |
| rs4363276 | 0.84[AMR][1000 genomes] |
| rs4424349 | 0.83[AMR][1000 genomes] |
| rs4877783 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs4877786 | 0.84[AMR][1000 genomes] |
| rs5028328 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs59177824 | 0.89[EUR][1000 genomes] |
| rs62560308 | 0.90[AFR][1000 genomes] |
| rs7025284 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7037642 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7042568 | 0.85[AMR][1000 genomes] |
| rs7043391 | 0.85[AMR][1000 genomes] |
| rs7043575 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7046729 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7862471 | 0.84[AMR][1000 genomes] |
| rs7863618 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv893512 | chr9:86022215-86323309 | Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| 2 | nsv1038884 | chr9:86089963-86215800 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:86089800-86106600 | Weak transcription | Hela-S3 | cervix |
| 2 | chr9:86098000-86106400 | Weak transcription | Psoas Muscle | Psoas |
