Variant report

Variant	rs59177824
Chromosome Location	chr9:86138120-86138121
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11789184	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34077008	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3860933	0.89[EUR][1000 genomes]
rs3860934	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4877783	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs5028328	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7025284	0.89[EUR][1000 genomes]
rs7037642	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7043575	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7046729	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7863618	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1038884	chr9:86089963-86215800	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86114800-86145800	Weak transcription	Aorta	Aorta
2	chr9:86115200-86141000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:86129800-86141800	Weak transcription	Left Ventricle	heart
4	chr9:86135800-86138600	Weak transcription	Psoas Muscle	Psoas
5	chr9:86136600-86141800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:86136800-86138600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr9:86137000-86138200	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr9:86137000-86141800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:86137200-86138600	Weak transcription	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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