Variant report
| Variant | rs13316358 |
|---|---|
| Chromosome Location | chr3:80012152-80012153 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | FOS | chr3:80012001-80012177 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| HMGB1P38 | TF binding region |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs10222614 | 1.00[AMR][1000 genomes] |
| rs13320510 | 1.00[AMR][1000 genomes] |
| rs13324017 | 1.00[AMR][1000 genomes] |
| rs28608180 | 1.00[AMR][1000 genomes] |
| rs7650943 | 1.00[EUR][1000 genomes] |
| rs9812811 | 1.00[AMR][1000 genomes] |
| rs9832496 | 1.00[AMR][1000 genomes] |
| rs9833813 | 1.00[AMR][1000 genomes] |
| rs9839452 | 1.00[AMR][1000 genomes] |
| rs9839529 | 1.00[AMR][1000 genomes] |
| rs9850639 | 1.00[AMR][1000 genomes] |
| rs9853341 | 1.00[AMR][1000 genomes] |
| rs9854726 | 1.00[AMR][1000 genomes] |
| rs9875883 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1009391 | chr3:79604443-80035898 | Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv428088 | chr3:79934080-80112721 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv590740 | chr3:79999534-80575042 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv997786 | chr3:80008898-80489031 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 5 | nsv536598 | chr3:80008898-80489031 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 6 | esv3410552 | chr3:80010662-80014360 | Enhancers | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
