Variant report

Variant	rs9833813
Chromosome Location	chr3:80004007-80004008
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10222614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13316358	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs13320510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13324017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17017427	1.00[AFR][1000 genomes]
rs28599730	1.00[AFR][1000 genomes]
rs28608180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9812811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9832496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9839452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9839529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9850639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9853341	1.00[AMR][1000 genomes]
rs9854726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9875883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009391	chr3:79604443-80035898	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428088	chr3:79934080-80112721	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv590740	chr3:79999534-80575042	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:80002400-80004200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr3:80002600-80004200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:80003200-80004400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:80004000-80004400	Active TSS	A549	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links