Variant report

Variant	rs9839452
Chromosome Location	chr3:80032786-80032787
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10222614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13316358	1.00[AMR][1000 genomes]
rs13320510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13324017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17017427	1.00[AFR][1000 genomes]
rs28599730	1.00[AFR][1000 genomes]
rs28608180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9812811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9832496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9833813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9839529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9850639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9853341	1.00[AMR][1000 genomes]
rs9854726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9875883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009391	chr3:79604443-80035898	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428088	chr3:79934080-80112721	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv590740	chr3:79999534-80575042	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv997786	chr3:80008898-80489031	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv536598	chr3:80008898-80489031	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv877030	chr3:80013063-80444843	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:80032200-80033000	Enhancers	HUVEC	blood vessel
2	chr3:80032400-80033000	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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