Variant report

Variant	rs13320162
Chromosome Location	chr3:24568345-24568346
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2196439	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs28461519	1.00[EUR][1000 genomes]
rs28576510	0.86[EUR][1000 genomes]
rs28703587	0.86[EUR][1000 genomes]
rs35212657	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73135419	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73152154	0.87[EUR][1000 genomes]
rs73152156	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9818588	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9826814	0.86[EUR][1000 genomes]
rs9828779	0.86[EUR][1000 genomes]
rs9838339	0.86[EUR][1000 genomes]
rs9839648	1.00[CEU][hapmap]
rs9850959	0.86[EUR][1000 genomes]
rs9864136	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9864374	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1012975	chr3:24500706-24615644	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24564000-24568400	Enhancers	Brain Germinal Matrix	brain
2	chr3:24564000-24568400	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:24566200-24591800	Weak transcription	Psoas Muscle	Psoas
4	chr3:24566600-24568600	Weak transcription	Fetal Brain Male	brain
5	chr3:24566600-24572000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:24567400-24568600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:24567600-24568600	Enhancers	Liver	Liver
8	chr3:24567800-24568800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr3:24568000-24568400	Weak transcription	Stomach Mucosa	stomach
10	chr3:24568200-24568800	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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