Variant report
| Variant | rs9818588 |
|---|---|
| Chromosome Location | chr3:24602535-24602536 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:24598639..24600629-chr3:24601001..24603431,2 | K562 | blood: | |
| 2 | chr3:24588062..24593366-chr3:24599912..24603837,6 | K562 | blood: | |
| 3 | chr3:24599129..24600747-chr3:24601001..24605288,3 | K562 | blood: | |
| 4 | chr3:24595597..24597335-chr3:24600224..24602927,2 | K562 | blood: | |
| 5 | chr3:24595835..24598544-chr3:24600224..24603154,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000233544 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs13320162 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs2196439 | 1.00[CEU][hapmap] |
| rs28461519 | 1.00[EUR][1000 genomes] |
| rs28576510 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs28703587 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs35212657 | 1.00[EUR][1000 genomes] |
| rs73135419 | 1.00[EUR][1000 genomes] |
| rs73152154 | 0.87[EUR][1000 genomes] |
| rs73152156 | 0.87[EUR][1000 genomes] |
| rs9826814 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs9828779 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs9833836 | 1.00[AMR][1000 genomes] |
| rs9838339 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs9839648 | 1.00[CEU][hapmap] |
| rs9850959 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs9864136 | 1.00[EUR][1000 genomes] |
| rs9864374 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834641 | chr3:24465862-24633738 | Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 19 gene(s) | inside rSNPs | diseases |
| 2 | nsv834642 | chr3:24475558-24640593 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 19 gene(s) | inside rSNPs | diseases |
| 3 | nsv1012975 | chr3:24500706-24615644 | Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 18 gene(s) | inside rSNPs | diseases |
| 4 | nsv999384 | chr3:24525345-24656873 | Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 18 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
