Variant report

Variant	rs28461519
Chromosome Location	chr3:24600383-24600384
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24599129..24600747-chr3:24601001..24605288,3	K562	blood:
2	chr3:24588062..24593366-chr3:24599912..24603837,6	K562	blood:
3	chr3:24591863..24594583-chr3:24599435..24602083,2	K562	blood:
4	chr3:24599960..24602220-chr3:24631656..24634494,2	K562	blood:
5	chr3:24598839..24600679-chr3:24603788..24605364,2	K562	blood:
6	chr3:24598639..24600629-chr3:24601001..24603431,2	K562	blood:
7	chr3:24595597..24597335-chr3:24600224..24602927,2	K562	blood:
8	chr3:24595835..24598544-chr3:24600224..24603154,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13320162	1.00[EUR][1000 genomes]
rs28576510	0.86[EUR][1000 genomes]
rs28703587	0.86[EUR][1000 genomes]
rs35212657	1.00[EUR][1000 genomes]
rs73135419	1.00[EUR][1000 genomes]
rs73152154	0.87[EUR][1000 genomes]
rs73152156	0.87[EUR][1000 genomes]
rs9818588	1.00[EUR][1000 genomes]
rs9826814	0.86[EUR][1000 genomes]
rs9828779	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9833836	0.95[AFR][1000 genomes]
rs9838339	0.86[EUR][1000 genomes]
rs9850959	0.86[EUR][1000 genomes]
rs9864136	1.00[EUR][1000 genomes]
rs9864374	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1012975	chr3:24500706-24615644	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24600000-24601800	Enhancers	Fetal Brain Male	brain
2	chr3:24600200-24600600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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