Variant report

Variant	rs13327174
Chromosome Location	chr3:43190465-43190466
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1125065	0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.98[ASN][1000 genomes]
rs11925735	0.99[ASN][1000 genomes]
rs12495981	0.97[ASN][1000 genomes]
rs17405306	0.97[ASN][1000 genomes]
rs17470866	0.99[ASN][1000 genomes]
rs2008369	0.82[ASN][1000 genomes]
rs2372336	0.98[ASN][1000 genomes]
rs57507574	1.00[ASN][1000 genomes]
rs58512215	0.97[ASN][1000 genomes]
rs73083260	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73084637	0.91[ASN][1000 genomes]
rs73084642	0.97[ASN][1000 genomes]
rs73084648	0.92[ASN][1000 genomes]
rs73084651	0.98[ASN][1000 genomes]
rs73084652	0.98[ASN][1000 genomes]
rs7625507	0.89[ASN][1000 genomes]
rs9810300	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9848658	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9848907	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834672	chr3:43132722-43306272	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv3784	chr3:43176397-43221254	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13327174	CCDC13	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43188400-43193400	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:43188600-43190600	Enhancers	HepG2	liver
3	chr3:43190200-43195200	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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