Variant report

Variant	rs9848658
Chromosome Location	chr3:43184683-43184684
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1125065	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11925735	0.99[ASN][1000 genomes]
rs12495981	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13327174	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17405306	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17470866	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2008369	0.81[ASN][1000 genomes]
rs2372336	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57507574	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58512215	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73083260	0.92[ASN][1000 genomes]
rs73084637	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73084642	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73084648	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73084651	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73084652	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7625507	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9810300	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9848907	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834672	chr3:43132722-43306272	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv3784	chr3:43176397-43221254	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43184000-43186600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr3:43184200-43186600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:43184200-43186800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr3:43184400-43184800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:43184400-43185400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr3:43184400-43185600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr3:43184400-43188600	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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