Variant report

Variant	rs13327225
Chromosome Location	chr3:51754491-51754492
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:51745481..51748293-chr3:51752667..51754621,3	MCF-7	breast:
2	chr3:51741483..51743641-chr3:51752692..51755400,2	MCF-7	breast:
3	chr3:51747093..51749731-chr3:51751469..51754766,3	K562	blood:

Variant related genes	Relation type
ENSG00000164082	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12632925	1.00[CHD][hapmap]
rs13316894	1.00[AMR][1000 genomes]
rs13317936	1.00[AMR][1000 genomes]
rs13321111	1.00[AMR][1000 genomes]
rs13321674	1.00[MEX][hapmap]
rs13325153	1.00[MEX][hapmap]
rs17051832	1.00[MEX][hapmap]
rs17081501	1.00[MEX][hapmap]
rs28454463	1.00[AMR][1000 genomes]
rs28626048	0.90[LWK][hapmap];1.00[MKK][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6779163	1.00[AMR][1000 genomes]
rs6792143	1.00[MEX][hapmap]
rs6806124	1.00[MEX][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs7635546	1.00[AMR][1000 genomes]
rs9809757	1.00[MEX][hapmap]
rs9812682	1.00[AMR][1000 genomes]
rs9815475	1.00[MEX][hapmap]
rs9824779	1.00[MEX][hapmap]
rs9826415	1.00[AMR][1000 genomes]
rs9829002	1.00[AMR][1000 genomes]
rs9842066	1.00[MEX][hapmap]
rs9846343	1.00[AMR][1000 genomes]
rs9868612	1.00[AMR][1000 genomes]
rs9875513	1.00[AMR][1000 genomes]
rs9878053	1.00[AMR][1000 genomes]
rs9878564	1.00[MEX][hapmap]
rs9880050	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51740200-51755400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:51741800-51756000	Weak transcription	Gastric	stomach
3	chr3:51749800-51755000	Weak transcription	Primary T cells from cord blood	blood
4	chr3:51750800-51755600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:51751400-51755400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:51752200-51755400	Weak transcription	Fetal Brain Female	brain
7	chr3:51752200-51756400	Enhancers	Primary T cells fromperipheralblood	blood
8	chr3:51752600-51755800	Weak transcription	Brain Germinal Matrix	brain
9	chr3:51752800-51755800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr3:51753000-51756200	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr3:51753000-51756400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr3:51753200-51756200	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr3:51753200-51756200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr3:51753400-51754600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr3:51753400-51755000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr3:51753400-51755400	Weak transcription	Fetal Brain Male	brain
17	chr3:51753400-51755400	Weak transcription	Spleen	Spleen
18	chr3:51753600-51754800	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr3:51753600-51755200	Weak transcription	Primary B cells from peripheral blood	blood
20	chr3:51753600-51755200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr3:51753600-51755200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr3:51753600-51755200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr3:51753600-51755200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr3:51753600-51755400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr3:51753600-51755600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr3:51754200-51754800	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr3:51754200-51755000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr3:51754200-51755200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr3:51754400-51755400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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