Variant report

Variant	rs9868612
Chromosome Location	chr3:51491830-51491831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13316894	1.00[AMR][1000 genomes]
rs13317936	1.00[AMR][1000 genomes]
rs13321111	1.00[AMR][1000 genomes]
rs13322621	1.00[AMR][1000 genomes]
rs13327225	1.00[AMR][1000 genomes]
rs13353505	1.00[AMR][1000 genomes]
rs28454463	1.00[AMR][1000 genomes]
rs28626048	1.00[AMR][1000 genomes]
rs28890042	1.00[AMR][1000 genomes]
rs6777506	1.00[AMR][1000 genomes]
rs6779163	1.00[AMR][1000 genomes]
rs6806124	1.00[AMR][1000 genomes]
rs7635546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9812682	1.00[AMR][1000 genomes]
rs9826415	1.00[AMR][1000 genomes]
rs9828325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9829002	1.00[AMR][1000 genomes]
rs9841963	1.00[AMR][1000 genomes]
rs9846343	1.00[AMR][1000 genomes]
rs9853900	1.00[AMR][1000 genomes]
rs9855214	1.00[AMR][1000 genomes]
rs9875513	1.00[AMR][1000 genomes]
rs9878053	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51458200-51515000	Weak transcription	Fetal Brain Male	brain
2	chr3:51458400-51500200	Weak transcription	Psoas Muscle	Psoas
3	chr3:51458800-51503800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr3:51467800-51502000	Weak transcription	HMEC	breast
5	chr3:51467800-51524000	Weak transcription	Small Intestine	intestine
6	chr3:51470600-51498400	Weak transcription	Colon Smooth Muscle	Colon
7	chr3:51472000-51498000	Weak transcription	NHEK	skin
8	chr3:51474200-51497600	Weak transcription	Ovary	ovary
9	chr3:51475800-51495800	Weak transcription	Fetal Kidney	kidney
10	chr3:51475800-51496200	Weak transcription	Spleen	Spleen
11	chr3:51475800-51498600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr3:51475800-51499200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr3:51475800-51500400	Weak transcription	K562	blood
14	chr3:51476000-51495800	Weak transcription	Brain Angular Gyrus	brain
15	chr3:51476000-51496200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:51476000-51496200	Weak transcription	Left Ventricle	heart
17	chr3:51476000-51496200	Weak transcription	Pancreas	Pancrea
18	chr3:51476000-51496200	Weak transcription	HUVEC	blood vessel
19	chr3:51476000-51497000	Weak transcription	NHDF-Ad	bronchial
20	chr3:51476000-51497200	Weak transcription	Hela-S3	cervix
21	chr3:51476000-51497400	Weak transcription	Brain Substantia Nigra	brain
22	chr3:51476000-51497600	Weak transcription	Aorta	Aorta
23	chr3:51476000-51497600	Weak transcription	Gastric	stomach
24	chr3:51476000-51498600	Weak transcription	Brain Cingulate Gyrus	brain
25	chr3:51476000-51499800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr3:51476000-51506000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr3:51476200-51495600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr3:51476200-51495800	Weak transcription	Lung	lung
29	chr3:51476200-51500000	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr3:51476200-51500200	Weak transcription	Osteobl	bone
31	chr3:51476400-51495600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr3:51476400-51496200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr3:51476400-51497400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr3:51476600-51496200	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr3:51476600-51497600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr3:51477000-51495600	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr3:51477000-51496200	Weak transcription	HSMMtube	muscle
38	chr3:51477000-51497000	Weak transcription	Stomach Smooth Muscle	stomach
39	chr3:51477200-51495800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr3:51477200-51495800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr3:51477200-51496200	Weak transcription	Liver	Liver
42	chr3:51477200-51496200	Weak transcription	Placenta	Placenta
43	chr3:51477200-51496200	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr3:51477200-51496200	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr3:51477200-51496800	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr3:51477200-51498200	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr3:51477200-51515000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr3:51477400-51496200	Weak transcription	Primary B cells from cord blood	blood
49	chr3:51477400-51496200	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr3:51477600-51496200	Weak transcription	Rectal Mucosa Donor 31	rectum

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