Variant report

Variant	rs7635546
Chromosome Location	chr3:51481866-51481867
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13316894	1.00[AMR][1000 genomes]
rs13317936	1.00[AMR][1000 genomes]
rs13321111	1.00[AMR][1000 genomes]
rs13322621	1.00[AMR][1000 genomes]
rs13327225	1.00[AMR][1000 genomes]
rs13353505	1.00[AMR][1000 genomes]
rs28454463	1.00[AMR][1000 genomes]
rs28626048	1.00[AMR][1000 genomes]
rs28890042	1.00[AMR][1000 genomes]
rs6777506	1.00[AMR][1000 genomes]
rs6779163	1.00[AMR][1000 genomes]
rs6806124	1.00[AMR][1000 genomes]
rs9812682	1.00[AMR][1000 genomes]
rs9826415	1.00[AMR][1000 genomes]
rs9828325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9829002	1.00[AMR][1000 genomes]
rs9841963	1.00[AMR][1000 genomes]
rs9846343	1.00[AMR][1000 genomes]
rs9853900	1.00[AMR][1000 genomes]
rs9855214	1.00[AMR][1000 genomes]
rs9868612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9875513	1.00[AMR][1000 genomes]
rs9878053	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51458200-51489400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:51458200-51515000	Weak transcription	Fetal Brain Male	brain
3	chr3:51458400-51500200	Weak transcription	Psoas Muscle	Psoas
4	chr3:51458800-51503800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr3:51467800-51482000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:51467800-51502000	Weak transcription	HMEC	breast
7	chr3:51467800-51524000	Weak transcription	Small Intestine	intestine
8	chr3:51470600-51498400	Weak transcription	Colon Smooth Muscle	Colon
9	chr3:51472000-51498000	Weak transcription	NHEK	skin
10	chr3:51474200-51497600	Weak transcription	Ovary	ovary
11	chr3:51475800-51484400	Weak transcription	A549	lung
12	chr3:51475800-51495800	Weak transcription	Fetal Kidney	kidney
13	chr3:51475800-51496200	Weak transcription	Spleen	Spleen
14	chr3:51475800-51498600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr3:51475800-51499200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr3:51475800-51500400	Weak transcription	K562	blood
17	chr3:51476000-51482000	Weak transcription	NH-A	brain
18	chr3:51476000-51482800	Weak transcription	GM12878-XiMat	blood
19	chr3:51476000-51483200	Weak transcription	NHLF	lung
20	chr3:51476000-51483800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr3:51476000-51484600	Weak transcription	Fetal Lung	lung
22	chr3:51476000-51484600	Weak transcription	HSMM	muscle
23	chr3:51476000-51488200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr3:51476000-51489200	Weak transcription	Thymus	Thymus
25	chr3:51476000-51489400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr3:51476000-51489600	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr3:51476000-51490000	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr3:51476000-51490000	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr3:51476000-51495800	Weak transcription	Brain Angular Gyrus	brain
30	chr3:51476000-51496200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr3:51476000-51496200	Weak transcription	Left Ventricle	heart
32	chr3:51476000-51496200	Weak transcription	Pancreas	Pancrea
33	chr3:51476000-51496200	Weak transcription	HUVEC	blood vessel
34	chr3:51476000-51497000	Weak transcription	NHDF-Ad	bronchial
35	chr3:51476000-51497200	Weak transcription	Hela-S3	cervix
36	chr3:51476000-51497400	Weak transcription	Brain Substantia Nigra	brain
37	chr3:51476000-51497600	Weak transcription	Aorta	Aorta
38	chr3:51476000-51497600	Weak transcription	Gastric	stomach
39	chr3:51476000-51498600	Weak transcription	Brain Cingulate Gyrus	brain
40	chr3:51476000-51499800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr3:51476000-51506000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr3:51476200-51489200	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr3:51476200-51495600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr3:51476200-51495800	Weak transcription	Lung	lung
45	chr3:51476200-51500000	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr3:51476200-51500200	Weak transcription	Osteobl	bone
47	chr3:51476400-51483600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr3:51476400-51484400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr3:51476400-51484400	Weak transcription	Brain Hippocampus Middle	brain
50	chr3:51476400-51485200	Weak transcription	Fetal Muscle Trunk	muscle

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