Variant report

Variant	rs13353505
Chromosome Location	chr3:51390967-51390968
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13316894	1.00[AMR][1000 genomes]
rs13321111	1.00[AMR][1000 genomes]
rs13322621	1.00[AMR][1000 genomes]
rs28454463	1.00[AMR][1000 genomes]
rs28890042	1.00[AMR][1000 genomes]
rs6777506	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6779163	1.00[AMR][1000 genomes]
rs7635546	1.00[AMR][1000 genomes]
rs9812682	1.00[AMR][1000 genomes]
rs9826415	1.00[AMR][1000 genomes]
rs9828325	1.00[AMR][1000 genomes]
rs9829002	1.00[AMR][1000 genomes]
rs9841963	1.00[AMR][1000 genomes]
rs9846343	1.00[AMR][1000 genomes]
rs9853900	1.00[AMR][1000 genomes]
rs9855214	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9868612	1.00[AMR][1000 genomes]
rs9875513	1.00[AMR][1000 genomes]
rs9878053	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005858	chr3:51090373-51444027	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv536569	chr3:51090373-51444027	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
4	esv20206	chr3:51344873-51415825	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51376800-51391800	Weak transcription	Brain Germinal Matrix	brain
2	chr3:51376800-51392400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:51378000-51399800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:51378600-51421000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:51378800-51421400	Weak transcription	Right Ventricle	heart
6	chr3:51379000-51393800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr3:51379000-51414600	Weak transcription	Left Ventricle	heart
8	chr3:51379200-51393600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr3:51379200-51393800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr3:51379200-51399800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr3:51379400-51403400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr3:51380000-51398400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr3:51380000-51398400	Weak transcription	Aorta	Aorta
14	chr3:51381400-51392000	Weak transcription	Brain Anterior Caudate	brain
15	chr3:51381800-51392200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr3:51382800-51392200	Weak transcription	HSMMtube	muscle
17	chr3:51383000-51391000	Weak transcription	Brain Hippocampus Middle	brain
18	chr3:51384200-51392400	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr3:51384200-51393800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr3:51384200-51420600	Weak transcription	Fetal Brain Male	brain
21	chr3:51385400-51405600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr3:51386400-51405400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr3:51386600-51392200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:51387200-51392400	Strong transcription	Brain Inferior Temporal Lobe	brain
25	chr3:51388000-51392400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr3:51388000-51393600	Weak transcription	Fetal Stomach	stomach
27	chr3:51388400-51400800	Strong transcription	Brain Angular Gyrus	brain
28	chr3:51389000-51391800	Weak transcription	Stomach Smooth Muscle	stomach
29	chr3:51389000-51392600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr3:51390000-51391000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr3:51390200-51392000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr3:51390200-51400400	Strong transcription	Fetal Brain Female	brain
33	chr3:51390400-51392200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr3:51390400-51392200	Weak transcription	Esophagus	oesophagus
35	chr3:51390400-51394400	Weak transcription	Brain Cingulate Gyrus	brain
36	chr3:51390600-51392000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr3:51390600-51392200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr3:51390600-51392200	Weak transcription	Brain Substantia Nigra	brain
39	chr3:51390800-51393000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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