Variant report
Variant | rs13327449 |
---|---|
Chromosome Location | chr3:98724440-98724441 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10084679 | 0.83[AMR][1000 genomes] |
rs12330381 | 0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs13094707 | 0.93[ASN][1000 genomes] |
rs13317610 | 0.88[EUR][1000 genomes] |
rs13318536 | 0.93[ASN][1000 genomes] |
rs13318960 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13320266 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs13320890 | 0.83[AMR][1000 genomes] |
rs13327485 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2133575 | 0.80[ASN][1000 genomes] |
rs2454687 | 0.80[ASN][1000 genomes] |
rs2470884 | 0.80[ASN][1000 genomes] |
rs28528154 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs28637457 | 0.93[ASN][1000 genomes] |
rs28650813 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs28821579 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs28883308 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs28890260 | 1.00[AMR][1000 genomes] |
rs34693680 | 0.93[ASN][1000 genomes] |
rs56172805 | 0.88[EUR][1000 genomes] |
rs6795351 | 0.80[ASN][1000 genomes] |
rs72938540 | 0.86[EUR][1000 genomes] |
rs7621508 | 0.80[ASN][1000 genomes] |
rs9289696 | 0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs9289699 | 0.97[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs9289700 | 0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs9810407 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs9818215 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs9819279 | 0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs9819309 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs9828045 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs9833945 | 0.83[AMR][1000 genomes] |
rs9836437 | 0.88[EUR][1000 genomes] |
rs9836915 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs9838166 | 0.88[EUR][1000 genomes] |
rs9838238 | 0.83[AMR][1000 genomes] |
rs9839559 | 0.83[AMR][1000 genomes] |
rs9842226 | 0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs9842555 | 1.00[AMR][1000 genomes] |
rs9848335 | 0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs9848583 | 0.83[AMR][1000 genomes] |
rs9850469 | 0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs9852537 | 0.83[AMR][1000 genomes] |
rs9852889 | 0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs9859042 | 0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs9864010 | 0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs9870940 | 0.97[EUR][1000 genomes] |
rs9872073 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9872301 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9879302 | 0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs9883751 | 0.88[EUR][1000 genomes] |
rs996199 | 0.80[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv591065 | chr3:98204198-98766326 | Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
2 | nsv1007140 | chr3:98421229-99202458 | Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
3 | nsv536663 | chr3:98421229-99202458 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
4 | nsv877214 | chr3:98445324-98738006 | Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
5 | nsv1007486 | chr3:98597738-99249081 | Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
6 | nsv980100 | chr3:98714787-98766962 | Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:98717200-98730600 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
2 | chr3:98717600-98729200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
3 | chr3:98721800-98726200 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |