Variant report

Variant	rs6795351
Chromosome Location	chr3:98659284-98659285
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10935512	0.84[AFR][1000 genomes]
rs12330381	0.87[ASN][1000 genomes]
rs13094707	0.87[ASN][1000 genomes]
rs13318536	0.87[ASN][1000 genomes]
rs13318960	0.80[ASN][1000 genomes]
rs13327449	0.80[ASN][1000 genomes]
rs13327485	0.80[ASN][1000 genomes]
rs1351496	0.98[AFR][1000 genomes]
rs1383908	0.95[AFR][1000 genomes]
rs1440157	0.95[AFR][1000 genomes]
rs1531736	0.98[AFR][1000 genomes]
rs1600788	0.94[AFR][1000 genomes]
rs1818053	0.84[AFR][1000 genomes]
rs1972432	0.92[AFR][1000 genomes]
rs2128053	0.95[AFR][1000 genomes]
rs2133575	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2173598	0.95[AFR][1000 genomes]
rs2439230	0.83[AFR][1000 genomes]
rs2439234	0.85[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2439235	0.83[AFR][1000 genomes]
rs2448985	0.81[AFR][1000 genomes]
rs2454672	0.91[AFR][1000 genomes]
rs2454681	0.92[AFR][1000 genomes]
rs2454683	0.95[AFR][1000 genomes]
rs2454687	1.00[ASN][1000 genomes]
rs2454690	0.82[AFR][1000 genomes]
rs2470820	0.85[AFR][1000 genomes]
rs2470828	0.84[AFR][1000 genomes]
rs2470850	0.83[AFR][1000 genomes]
rs2470856	0.92[AFR][1000 genomes]
rs2470858	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2470866	0.82[AFR][1000 genomes]
rs2470868	0.95[AFR][1000 genomes]
rs2470874	0.85[AFR][1000 genomes]
rs2470883	0.95[AFR][1000 genomes]
rs2470884	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs278375	0.80[AFR][1000 genomes]
rs278377	0.81[AFR][1000 genomes]
rs28528154	0.80[ASN][1000 genomes]
rs28637457	0.87[ASN][1000 genomes]
rs28650813	0.80[ASN][1000 genomes]
rs28821579	0.87[ASN][1000 genomes]
rs28883308	0.80[ASN][1000 genomes]
rs2929491	0.85[AFR][1000 genomes]
rs34693680	0.87[ASN][1000 genomes]
rs4273318	0.95[AFR][1000 genomes]
rs4857107	0.95[AFR][1000 genomes]
rs5013928	0.95[AFR][1000 genomes]
rs7373983	0.81[AFR][1000 genomes]
rs73858658	0.83[AFR][1000 genomes]
rs7430403	0.80[AFR][1000 genomes]
rs7621508	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7626395	0.85[AFR][1000 genomes]
rs7630797	0.89[AFR][1000 genomes]
rs9289696	0.87[ASN][1000 genomes]
rs9289700	0.87[ASN][1000 genomes]
rs974982	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9819279	0.87[ASN][1000 genomes]
rs9819309	0.87[ASN][1000 genomes]
rs9828045	0.87[ASN][1000 genomes]
rs9842226	0.87[ASN][1000 genomes]
rs9848335	0.87[ASN][1000 genomes]
rs9850469	0.87[ASN][1000 genomes]
rs9852889	0.87[ASN][1000 genomes]
rs9859042	0.87[ASN][1000 genomes]
rs9864010	0.87[ASN][1000 genomes]
rs9872073	0.80[ASN][1000 genomes]
rs9872301	0.80[ASN][1000 genomes]
rs9879302	0.87[ASN][1000 genomes]
rs996199	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591065	chr3:98204198-98766326	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv877214	chr3:98445324-98738006	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98643000-98663800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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