Variant report

Variant	rs2454687
Chromosome Location	chr3:98661270-98661271
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs10428160	0.83[EUR][1000 genomes]
rs10589669	0.87[EUR][1000 genomes]
rs11552978	1.00[CEU][hapmap]
rs12107272	0.91[EUR][1000 genomes]
rs12108018	0.89[EUR][1000 genomes]
rs12330381	0.87[ASN][1000 genomes]
rs13059624	0.89[CEU][hapmap]
rs13065136	0.91[EUR][1000 genomes]
rs13068317	0.89[EUR][1000 genomes]
rs13074614	0.89[EUR][1000 genomes]
rs13074787	0.83[EUR][1000 genomes]
rs13076960	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs13078549	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs13081992	0.91[EUR][1000 genomes]
rs13083238	0.89[EUR][1000 genomes]
rs13083613	1.00[CEU][hapmap]
rs13083934	0.89[EUR][1000 genomes]
rs13084692	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs13087627	0.87[EUR][1000 genomes]
rs13087631	0.89[EUR][1000 genomes]
rs13088532	0.83[EUR][1000 genomes]
rs13091170	0.87[EUR][1000 genomes]
rs13091236	1.00[CEU][hapmap]
rs13093128	1.00[CEU][hapmap]
rs13094707	0.87[ASN][1000 genomes]
rs13096085	0.91[EUR][1000 genomes]
rs13097876	0.91[EUR][1000 genomes]
rs13100915	0.91[EUR][1000 genomes]
rs13100937	0.91[EUR][1000 genomes]
rs13318536	0.87[ASN][1000 genomes]
rs13318960	0.80[ASN][1000 genomes]
rs13327449	0.80[ASN][1000 genomes]
rs13327485	0.80[ASN][1000 genomes]
rs1818053	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2133575	1.00[ASN][1000 genomes]
rs2439232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[EUR][1000 genomes]
rs2439234	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2470858	0.93[ASN][1000 genomes]
rs2470884	1.00[ASN][1000 genomes]
rs28528154	0.80[ASN][1000 genomes]
rs28637457	0.87[ASN][1000 genomes]
rs28650813	0.80[ASN][1000 genomes]
rs28821579	0.87[ASN][1000 genomes]
rs28883308	0.80[ASN][1000 genomes]
rs34008360	0.89[EUR][1000 genomes]
rs34269725	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs34279227	0.89[EUR][1000 genomes]
rs34284740	0.91[EUR][1000 genomes]
rs34394867	0.87[EUR][1000 genomes]
rs34428696	0.85[EUR][1000 genomes]
rs34489202	0.87[EUR][1000 genomes]
rs34688367	0.89[EUR][1000 genomes]
rs34693680	0.87[ASN][1000 genomes]
rs34711372	0.89[EUR][1000 genomes]
rs34725039	0.91[EUR][1000 genomes]
rs34826460	0.91[EUR][1000 genomes]
rs34848749	0.89[EUR][1000 genomes]
rs34860591	0.87[EUR][1000 genomes]
rs35006699	0.89[EUR][1000 genomes]
rs35025156	0.91[EUR][1000 genomes]
rs35076733	0.91[EUR][1000 genomes]
rs35098355	0.89[EUR][1000 genomes]
rs35103318	0.91[EUR][1000 genomes]
rs35219252	0.89[EUR][1000 genomes]
rs35234681	0.89[EUR][1000 genomes]
rs35239055	0.89[EUR][1000 genomes]
rs35312318	0.91[EUR][1000 genomes]
rs35366262	0.89[EUR][1000 genomes]
rs35422064	0.89[EUR][1000 genomes]
rs35499232	0.91[EUR][1000 genomes]
rs35514544	0.91[EUR][1000 genomes]
rs35526367	0.87[EUR][1000 genomes]
rs35539438	0.87[EUR][1000 genomes]
rs35592768	0.87[EUR][1000 genomes]
rs35764973	0.91[EUR][1000 genomes]
rs35914268	0.89[EUR][1000 genomes]
rs35947806	0.89[EUR][1000 genomes]
rs36098932	0.91[EUR][1000 genomes]
rs36157152	0.91[EUR][1000 genomes]
rs55644421	0.89[EUR][1000 genomes]
rs56083233	0.91[EUR][1000 genomes]
rs56246599	0.91[EUR][1000 genomes]
rs56408882	0.87[EUR][1000 genomes]
rs6764579	0.89[EUR][1000 genomes]
rs6795351	1.00[ASN][1000 genomes]
rs6805362	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs71311398	0.89[EUR][1000 genomes]
rs71311402	0.89[EUR][1000 genomes]
rs71313504	0.87[EUR][1000 genomes]
rs71313506	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71313508	0.91[EUR][1000 genomes]
rs71313509	0.91[EUR][1000 genomes]
rs71313510	0.91[EUR][1000 genomes]
rs71313511	0.91[EUR][1000 genomes]
rs7614053	0.89[EUR][1000 genomes]
rs7621508	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs828606	0.85[YRI][hapmap]
rs866873	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9289696	0.87[ASN][1000 genomes]
rs9289700	0.87[ASN][1000 genomes]
rs9819279	0.87[ASN][1000 genomes]
rs9819309	0.87[ASN][1000 genomes]
rs9828045	0.87[ASN][1000 genomes]
rs9842226	0.87[ASN][1000 genomes]
rs9848335	0.87[ASN][1000 genomes]
rs9850469	0.87[ASN][1000 genomes]
rs9852889	0.87[ASN][1000 genomes]
rs9859042	0.87[ASN][1000 genomes]
rs9864010	0.87[ASN][1000 genomes]
rs9872073	0.80[ASN][1000 genomes]
rs9872301	0.80[ASN][1000 genomes]
rs9879302	0.87[ASN][1000 genomes]
rs9883226	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs996199	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591065	chr3:98204198-98766326	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv877214	chr3:98445324-98738006	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98643000-98663800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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