Variant report

Variant	rs13330168
Chromosome Location	chr16:83046625-83046626
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12102653	1.00[AMR][1000 genomes]
rs12103152	1.00[AMR][1000 genomes]
rs13330224	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13331344	1.00[AMR][1000 genomes]
rs16958941	1.00[AMR][1000 genomes]
rs28432212	1.00[AMR][1000 genomes]
rs28550766	1.00[AMR][1000 genomes]
rs28578186	1.00[AMR][1000 genomes]
rs28756196	1.00[AMR][1000 genomes]
rs74033119	1.00[AMR][1000 genomes]
rs8053876	1.00[AMR][1000 genomes]
rs9922544	1.00[AMR][1000 genomes]
rs9922948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9926637	1.00[AMR][1000 genomes]
rs9929103	1.00[AMR][1000 genomes]
rs9929449	1.00[AMR][1000 genomes]
rs9930035	1.00[AMR][1000 genomes]
rs9932185	1.00[AMR][1000 genomes]
rs9932493	1.00[AMR][1000 genomes]
rs9933027	1.00[AMR][1000 genomes]
rs9933230	1.00[AMR][1000 genomes]
rs9933340	1.00[AMR][1000 genomes]
rs9936026	1.00[AMR][1000 genomes]
rs9937448	1.00[AMR][1000 genomes]
rs9937544	1.00[AMR][1000 genomes]
rs9944318	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
2	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1063617	chr16:82786803-83229529	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1056005	chr16:82987872-83055420	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1055246	chr16:82988025-83056132	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1064172	chr16:82988932-83046695	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1903	chr16:83035452-83080314	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv949450	chr16:83044981-83099707	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:83030200-83047200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr16:83030200-83053200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr16:83030600-83047000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr16:83037000-83048800	Weak transcription	NHDF-Ad	bronchial
5	chr16:83037000-83049400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr16:83037000-83066000	Weak transcription	HSMMtube	muscle
7	chr16:83037200-83058000	Weak transcription	HSMM	muscle
8	chr16:83038400-83047400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr16:83039200-83054000	Weak transcription	Left Ventricle	heart
10	chr16:83039400-83052200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr16:83039400-83054000	Weak transcription	Right Ventricle	heart
12	chr16:83044400-83047600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr16:83044600-83047000	Weak transcription	Aorta	Aorta
14	chr16:83044600-83049000	Weak transcription	Fetal Brain Female	brain
15	chr16:83045400-83047600	Enhancers	Osteobl	bone
16	chr16:83046400-83047600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr16:83046600-83047200	Enhancers	Psoas Muscle	Psoas

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