Variant report

Variant	rs9922948
Chromosome Location	chr16:83074124-83074125
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12102653	1.00[AMR][1000 genomes]
rs12103152	1.00[AMR][1000 genomes]
rs13330168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13330224	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13331344	1.00[AMR][1000 genomes]
rs16958941	1.00[AMR][1000 genomes]
rs28550766	1.00[AMR][1000 genomes]
rs28756196	1.00[AMR][1000 genomes]
rs74033119	1.00[AMR][1000 genomes]
rs8053876	1.00[AMR][1000 genomes]
rs9929103	1.00[AMR][1000 genomes]
rs9930035	1.00[AMR][1000 genomes]
rs9936026	1.00[AMR][1000 genomes]
rs9937448	1.00[AMR][1000 genomes]
rs9937544	1.00[AMR][1000 genomes]
rs9944318	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
2	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1063617	chr16:82786803-83229529	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1903	chr16:83035452-83080314	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv949450	chr16:83044981-83099707	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv573385	chr16:83059913-83080502	Enhancers Strong transcription Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:83067800-83094200	Weak transcription	Aorta	Aorta
2	chr16:83069000-83079800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr16:83069000-83080400	Weak transcription	HSMMtube	muscle
4	chr16:83070600-83079600	Weak transcription	Lung	lung
5	chr16:83071000-83074200	Weak transcription	Fetal Muscle Leg	muscle
6	chr16:83072600-83074400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr16:83072800-83074600	Enhancers	NHEK	skin
8	chr16:83072800-83075600	Strong transcription	HSMM	muscle
9	chr16:83073000-83074200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr16:83073200-83074600	Enhancers	HMEC	breast
11	chr16:83073400-83074200	Enhancers	NH-A	brain
12	chr16:83073400-83074400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr16:83073400-83074600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr16:83073600-83074200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr16:83073600-83074600	Enhancers	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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