Variant report

Variant	rs9930035
Chromosome Location	chr16:82959916-82959917
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12102311	1.00[AMR][1000 genomes]
rs12102366	1.00[AMR][1000 genomes]
rs12102653	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12103152	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12103389	1.00[AMR][1000 genomes]
rs13330168	1.00[AMR][1000 genomes]
rs13330224	1.00[AMR][1000 genomes]
rs13331344	1.00[AMR][1000 genomes]
rs16958941	1.00[AMR][1000 genomes]
rs28432212	1.00[AMR][1000 genomes]
rs28550766	1.00[AMR][1000 genomes]
rs28578186	1.00[AMR][1000 genomes]
rs28756196	1.00[AMR][1000 genomes]
rs8053876	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9922544	1.00[AMR][1000 genomes]
rs9922948	1.00[AMR][1000 genomes]
rs9924337	1.00[AMR][1000 genomes]
rs9926637	1.00[AMR][1000 genomes]
rs9929103	1.00[AMR][1000 genomes]
rs9929449	1.00[AMR][1000 genomes]
rs9932185	1.00[AMR][1000 genomes]
rs9932493	1.00[AMR][1000 genomes]
rs9933027	1.00[AMR][1000 genomes]
rs9933230	1.00[AMR][1000 genomes]
rs9933340	1.00[AMR][1000 genomes]
rs9936026	1.00[AMR][1000 genomes]
rs9937448	1.00[AMR][1000 genomes]
rs9937544	1.00[AMR][1000 genomes]
rs9944318	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1063617	chr16:82786803-83229529	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv907028	chr16:82940611-82974628	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv907029	chr16:82951179-83044665	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv907030	chr16:82959437-83044665	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82926800-82961200	Weak transcription	HSMM	muscle
2	chr16:82934000-83003400	Weak transcription	NHEK	skin
3	chr16:82934400-82967000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr16:82934400-82967400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr16:82934600-82989600	Weak transcription	HSMMtube	muscle
6	chr16:82954200-82960400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr16:82957800-82960200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr16:82958000-82961000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr16:82958200-82960800	Enhancers	Primary T cells fromperipheralblood	blood
10	chr16:82958400-82966000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr16:82959200-82977400	Weak transcription	Left Ventricle	heart
12	chr16:82959200-82977600	Weak transcription	Right Atrium	heart
13	chr16:82959400-82960200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr16:82959400-82977400	Weak transcription	Right Ventricle	heart

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