Variant report

Variant	rs13330642
Chromosome Location	chr16:81712435-81712436
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81703842..81705571-chr16:81710332..81712926,2	MCF-7	breast:
2	chr16:81704952..81707703-chr16:81710502..81713638,3	K562	blood:
3	chr16:81709931..81712989-chr16:81713808..81717096,4	K562	blood:
4	chr16:81701008..81703495-chr16:81711317..81713346,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16955701	1.00[MEX][hapmap]
rs2925978	1.00[MEX][hapmap]
rs4889387	1.00[MEX][hapmap]
rs8054981	1.00[MEX][hapmap]
rs9940974	0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
2	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
3	nsv907011	chr16:81639190-81757252	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	esv3374261	chr16:81710051-81715149	Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81682400-81722400	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr16:81683600-81715600	Strong transcription	Primary T cells from cord blood	blood
3	chr16:81683800-81721800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr16:81684400-81722200	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr16:81684400-81722200	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr16:81686600-81715400	Strong transcription	Placenta	Placenta
7	chr16:81686600-81721600	Weak transcription	NH-A	brain
8	chr16:81686600-81725000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr16:81688400-81736800	Weak transcription	NHDF-Ad	bronchial
10	chr16:81689400-81713800	Weak transcription	Right Atrium	heart
11	chr16:81689800-81722200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr16:81689800-81722400	Strong transcription	Fetal Intestine Large	intestine
13	chr16:81691200-81721200	Strong transcription	Liver	Liver
14	chr16:81693400-81712800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr16:81695200-81717000	Strong transcription	NHEK	skin
16	chr16:81698800-81721400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr16:81699200-81725600	Weak transcription	Osteobl	bone
18	chr16:81699400-81715400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr16:81699400-81726000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr16:81701000-81725200	Weak transcription	Aorta	Aorta
21	chr16:81701200-81722200	Strong transcription	Fetal Intestine Small	intestine
22	chr16:81702000-81714600	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr16:81702000-81715400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr16:81702200-81721800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr16:81702200-81722200	Strong transcription	HepG2	liver
26	chr16:81702600-81721600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr16:81703200-81722200	Strong transcription	Primary B cells from peripheral blood	blood
28	chr16:81703400-81715800	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr16:81703400-81719000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr16:81703600-81716000	Strong transcription	Primary B cells from cord blood	blood
31	chr16:81703800-81717000	Strong transcription	Fetal Thymus	thymus
32	chr16:81703800-81717200	Strong transcription	Thymus	Thymus
33	chr16:81704200-81724600	Weak transcription	Hela-S3	cervix
34	chr16:81705400-81712600	Strong transcription	A549	lung
35	chr16:81706000-81713600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr16:81706200-81712600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr16:81706200-81712600	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr16:81706600-81725200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr16:81707600-81714600	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr16:81708000-81721200	Weak transcription	GM12878-XiMat	blood
41	chr16:81708800-81715200	Genic enhancers	Fetal Stomach	stomach
42	chr16:81709200-81716800	Strong transcription	Primary hematopoietic stem cells	blood
43	chr16:81709200-81716800	Strong transcription	Placenta Amnion	Placenta Amnion
44	chr16:81709200-81717400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr16:81709400-81713200	Strong transcription	K562	blood
46	chr16:81709400-81715400	Genic enhancers	Fetal Muscle Trunk	muscle
47	chr16:81709600-81713200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr16:81709600-81715400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr16:81709600-81715400	Strong transcription	Dnd41	blood
50	chr16:81709800-81713200	Strong transcription	HMEC	breast

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