Variant report

Variant	rs16955701
Chromosome Location	chr16:81669651-81669652
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81479233..81481383-chr16:81669168..81671118,2	MCF-7	breast:
2	chr16:81657533..81660095-chr16:81668723..81672229,3	K562	blood:
3	chr16:81667138..81669720-chr16:81770288..81773094,2	K562	blood:

Variant related genes	Relation type
ENSG00000261218	Chromatin interaction
ENSG00000197943	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13330642	1.00[MEX][hapmap]
rs2925978	1.00[MEX][hapmap]
rs4889387	1.00[MEX][hapmap]
rs8054981	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	nsv907011	chr16:81639190-81757252	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81659800-81678400	Weak transcription	Right Atrium	heart
2	chr16:81660000-81672000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr16:81660000-81683800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr16:81660200-81670000	Weak transcription	HSMM	muscle
5	chr16:81660200-81685600	Weak transcription	GM12878-XiMat	blood
6	chr16:81660400-81669800	Weak transcription	HSMMtube	muscle
7	chr16:81660800-81674800	Weak transcription	Gastric	stomach
8	chr16:81664000-81671000	Weak transcription	Primary B cells from peripheral blood	blood
9	chr16:81664200-81672800	Enhancers	Fetal Thymus	thymus
10	chr16:81664400-81673600	Enhancers	Primary hematopoietic stem cells	blood
11	chr16:81665800-81670000	Enhancers	Thymus	Thymus
12	chr16:81665800-81670600	Enhancers	Liver	Liver
13	chr16:81666000-81670000	Enhancers	Small Intestine	intestine
14	chr16:81666200-81669800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr16:81666200-81670400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr16:81666200-81670400	Enhancers	Duodenum Mucosa	Duodenum
17	chr16:81666200-81670600	Genic enhancers	Fetal Intestine Small	intestine
18	chr16:81666200-81674800	Enhancers	Fetal Muscle Trunk	muscle
19	chr16:81666200-81675200	Enhancers	Placenta	Placenta
20	chr16:81666600-81669800	Flanking Active TSS	K562	blood
21	chr16:81666800-81670600	Enhancers	Fetal Muscle Leg	muscle
22	chr16:81667000-81670000	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr16:81667000-81673400	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr16:81667000-81674600	Weak transcription	HMEC	breast
25	chr16:81667000-81678400	Weak transcription	Brain Anterior Caudate	brain
26	chr16:81667200-81669800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr16:81667200-81673600	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr16:81667200-81673600	Genic enhancers	A549	lung
29	chr16:81667200-81674400	Weak transcription	Primary T cells from cord blood	blood
30	chr16:81667200-81674600	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr16:81667200-81675200	Weak transcription	NHEK	skin
32	chr16:81667400-81672000	Enhancers	Fetal Lung	lung
33	chr16:81667400-81674400	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr16:81667400-81675600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr16:81667600-81671800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr16:81667600-81674600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr16:81667600-81682400	Weak transcription	Colonic Mucosa	Colon
38	chr16:81667800-81671200	Weak transcription	Esophagus	oesophagus
39	chr16:81667800-81682600	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr16:81668200-81670000	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr16:81668200-81671000	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr16:81668200-81672000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr16:81668200-81672600	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr16:81668200-81673800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr16:81668400-81669800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr16:81668400-81670400	Enhancers	Monocytes-CD14+_RO01746	blood
47	chr16:81668400-81673400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr16:81668400-81674000	Weak transcription	Dnd41	blood
49	chr16:81668400-81674400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr16:81668400-81674600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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