Variant report

Variant	rs4889387
Chromosome Location	chr16:81838784-81838785
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13330642	1.00[MEX][hapmap]
rs16955701	1.00[MEX][hapmap]
rs4889388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8045609	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
2	nsv573365	chr16:81804972-81975892	Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1067307	chr16:81832031-81851736	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1061544	chr16:81834313-81877375	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv10620	chr16:81837672-81841805	Transcr. at gene 5' and 3' Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1828970	chr16:81837844-81840684	Genic enhancers Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv442406	chr16:81837844-81840684	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81818000-81845000	Genic enhancers	Primary B cells from peripheral blood	blood
2	chr16:81819800-81848800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr16:81827800-81841800	Weak transcription	Fetal Intestine Small	intestine
4	chr16:81829200-81842400	Weak transcription	Pancreas	Pancrea
5	chr16:81830800-81842400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr16:81832400-81842400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr16:81832600-81840000	Weak transcription	Spleen	Spleen
8	chr16:81832800-81838800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr16:81832800-81839800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr16:81832800-81840800	Weak transcription	Placenta	Placenta
11	chr16:81832800-81848600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr16:81833000-81841600	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr16:81833200-81841400	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr16:81833200-81842000	Genic enhancers	Primary B cells from cord blood	blood
15	chr16:81837200-81838800	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr16:81837400-81842000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
17	chr16:81837800-81838800	Enhancers	Primary hematopoietic stem cells	blood
18	chr16:81838000-81839400	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr16:81838200-81840000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr16:81838200-81842400	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr16:81838400-81839600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr16:81838400-81844000	Weak transcription	Gastric	stomach
23	chr16:81838600-81839800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr16:81838600-81839800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr16:81838600-81840000	Weak transcription	Lung	lung
26	chr16:81838600-81841400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr16:81838600-81851400	Weak transcription	Right Atrium	heart

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