Variant report

Variant	rs13332101
Chromosome Location	chr16:13001996-13001997
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:12992528..12993182-chr16:13001335..13002204,2	MCF-7	breast:
2	chr16:12999904..13002334-chr16:13005037..13006799,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13333158	1.00[AMR][1000 genomes]
rs13334654	1.00[AMR][1000 genomes]
rs9922426	1.00[AMR][1000 genomes]
rs9926045	1.00[AMR][1000 genomes]
rs9927063	1.00[AMR][1000 genomes]
rs9933205	1.00[AMR][1000 genomes]
rs9934013	1.00[AMR][1000 genomes]
rs9939974	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051607	chr16:12522130-13347676	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv542750	chr16:12522130-13347676	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv869284	chr16:12735729-13533462	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv833142	chr16:12922572-13099421	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:12998400-13002400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr16:12998400-13012000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr16:12998600-13007400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr16:12998600-13011600	Weak transcription	HMEC	breast
5	chr16:12999200-13011000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr16:12999400-13011000	Weak transcription	Fetal Brain Female	brain
7	chr16:13000200-13002200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr16:13000200-13008600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr16:13000400-13003200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr16:13000400-13010400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr16:13000800-13002800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr16:13000800-13005800	Strong transcription	HSMM	muscle
13	chr16:13001200-13004600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr16:13001200-13005400	Strong transcription	HSMMtube	muscle
15	chr16:13001400-13002000	Enhancers	H1 Cell Line	embryonic stem cell
16	chr16:13001400-13002600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr16:13001400-13005800	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr16:13001600-13002000	Genic enhancers	HUES48 Cell Line	embryonic stem cell
19	chr16:13001600-13003000	Strong transcription	ES-I3 Cell Line	embryonic stem cell
20	chr16:13001600-13004600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr16:13001800-13002000	Genic enhancers	HUES6 Cell Line	embryonic stem cell
22	chr16:13001800-13002000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr16:13001800-13003000	Strong transcription	H9 Cell Line	embryonic stem cell
24	chr16:13001800-13003600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr16:13001800-13010600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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